Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1820 and DvMF_1821 are separated by 87 nucleotides DvMF_1821 and DvMF_1822 are separated by 199 nucleotides DvMF_1822 and DvMF_1823 are separated by 116 nucleotides DvMF_1823 and DvMF_1824 are separated by 12 nucleotides
DvMF_1820: DvMF_1820 - hypothetical protein (RefSeq), at 2,221,896 to 2,223,434
_1820
DvMF_1821: DvMF_1821 - Tir chaperone family protein (RefSeq), at 2,223,522 to 2,224,004
_1821
DvMF_1822: DvMF_1822 - aminotransferase class I and II (RefSeq), at 2,224,204 to 2,225,421
_1822
DvMF_1823: DvMF_1823 - hypothetical protein (RefSeq), at 2,225,538 to 2,226,068
_1823
DvMF_1824: DvMF_1824 - metal dependent phosphohydrolase (RefSeq), at 2,226,081 to 2,227,391
_1824
Position (kb)
2224
2225
2226 Strain fitness (log2 ratio)
-1
0
1 at 2223.220 kb on + strand, within DvMF_1820 at 2223.277 kb on + strand, within DvMF_1820 at 2223.472 kb on + strand at 2223.480 kb on - strand at 2223.480 kb on - strand at 2223.655 kb on + strand, within DvMF_1821 at 2223.900 kb on + strand, within DvMF_1821 at 2224.072 kb on + strand at 2224.415 kb on - strand, within DvMF_1822 at 2224.704 kb on + strand, within DvMF_1822 at 2224.760 kb on - strand, within DvMF_1822 at 2224.803 kb on - strand, within DvMF_1822 at 2224.803 kb on - strand, within DvMF_1822 at 2224.872 kb on - strand, within DvMF_1822 at 2224.894 kb on + strand, within DvMF_1822 at 2224.902 kb on - strand, within DvMF_1822 at 2224.957 kb on + strand, within DvMF_1822 at 2225.089 kb on - strand, within DvMF_1822 at 2225.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 2,223,220 + DvMF_1820 0.86 -0.7 2,223,277 + DvMF_1820 0.90 +0.4 2,223,472 + -0.4 2,223,480 - -1.1 2,223,480 - +0.0 2,223,655 + DvMF_1821 0.28 +0.0 2,223,900 + DvMF_1821 0.78 -0.3 2,224,072 + -0.3 2,224,415 - DvMF_1822 0.17 -1.1 2,224,704 + DvMF_1822 0.41 -0.5 2,224,760 - DvMF_1822 0.46 -0.6 2,224,803 - DvMF_1822 0.49 -1.6 2,224,803 - DvMF_1822 0.49 +0.1 2,224,872 - DvMF_1822 0.55 -0.2 2,224,894 + DvMF_1822 0.57 -0.6 2,224,902 - DvMF_1822 0.57 -0.3 2,224,957 + DvMF_1822 0.62 -1.3 2,225,089 - DvMF_1822 0.73 -0.3 2,225,499 + -0.9
Or see this region's nucleotide sequence