Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1777 and DvMF_1778 are separated by 131 nucleotides DvMF_1778 and DvMF_1779 are separated by 66 nucleotides DvMF_1779 and DvMF_1780 are separated by 205 nucleotides
DvMF_1777: DvMF_1777 - prophage PSPPH06, putative reverse transcriptase/maturase (RefSeq), at 2,176,242 to 2,177,597
_1777
DvMF_1778: DvMF_1778 - hypothetical protein (RefSeq), at 2,177,729 to 2,178,382
_1778
DvMF_1779: DvMF_1779 - helix-turn-helix protein, CopG family (RefSeq), at 2,178,449 to 2,178,697
_1779
DvMF_1780: DvMF_1780 - Aldehyde Dehydrogenase (RefSeq), at 2,178,903 to 2,180,585
_1780
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-1
0
1
2 at 2177.954 kb on + strand, within DvMF_1778 at 2178.403 kb on + strand at 2178.403 kb on + strand at 2178.403 kb on + strand at 2178.505 kb on - strand, within DvMF_1779 at 2178.610 kb on + strand, within DvMF_1779 at 2178.619 kb on - strand, within DvMF_1779 at 2178.643 kb on + strand, within DvMF_1779 at 2178.668 kb on - strand, within DvMF_1779 at 2178.700 kb on - strand at 2178.778 kb on + strand at 2178.828 kb on + strand at 2178.846 kb on - strand at 2178.846 kb on - strand at 2179.299 kb on + strand, within DvMF_1780
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 2,177,954 + DvMF_1778 0.34 +0.6 2,178,403 + -0.6 2,178,403 + -0.7 2,178,403 + -0.3 2,178,505 - DvMF_1779 0.22 -0.7 2,178,610 + DvMF_1779 0.65 -0.6 2,178,619 - DvMF_1779 0.68 -0.1 2,178,643 + DvMF_1779 0.78 -0.7 2,178,668 - DvMF_1779 0.88 -0.2 2,178,700 - -0.6 2,178,778 + +0.5 2,178,828 + +2.0 2,178,846 - -0.4 2,178,846 - -0.9 2,179,299 + DvMF_1780 0.24 -0.3
Or see this region's nucleotide sequence