Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1434

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1433 and DvMF_1434 are separated by 342 nucleotidesDvMF_1434 and DvMF_1435 are separated by 284 nucleotides DvMF_1433: DvMF_1433 - iron-containing alcohol dehydrogenase (RefSeq), at 1,754,175 to 1,755,470 _1433 DvMF_1434: DvMF_1434 - DNA-directed DNA polymerase (RefSeq), at 1,755,813 to 1,757,306 _1434 DvMF_1435: DvMF_1435 - peptidase S24 and S26 domain protein (RefSeq), at 1,757,591 to 1,758,043 _1435 Position (kb) 1755 1756 1757 1758Strain fitness (log2 ratio) -2 -1 0 1at 1754.888 kb on - strand, within DvMF_1433at 1755.035 kb on - strand, within DvMF_1433at 1755.256 kb on - strand, within DvMF_1433at 1755.383 kb on - strandat 1755.419 kb on - strandat 1755.440 kb on + strandat 1755.686 kb on - strandat 1755.826 kb on + strandat 1755.855 kb on + strandat 1756.052 kb on + strand, within DvMF_1434at 1756.052 kb on + strand, within DvMF_1434at 1756.070 kb on - strand, within DvMF_1434at 1756.097 kb on - strand, within DvMF_1434at 1756.181 kb on - strand, within DvMF_1434at 1756.521 kb on - strand, within DvMF_1434at 1756.571 kb on + strand, within DvMF_1434at 1756.865 kb on + strand, within DvMF_1434at 1756.909 kb on - strand, within DvMF_1434at 1756.909 kb on - strand, within DvMF_1434at 1756.990 kb on + strand, within DvMF_1434at 1756.998 kb on - strand, within DvMF_1434at 1757.068 kb on + strand, within DvMF_1434at 1757.068 kb on + strand, within DvMF_1434at 1757.317 kb on + strandat 1757.567 kb on - strandat 1757.605 kb on + strandat 1757.630 kb on - strandat 1757.834 kb on - strand, within DvMF_1435at 1757.894 kb on + strand, within DvMF_1435at 1758.077 kb on - strandat 1758.077 kb on - strandat 1758.160 kb on + strandat 1758.243 kb on + strandat 1758.274 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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1,754,888 - DvMF_1433 0.55 +0.3
1,755,035 - DvMF_1433 0.66 -0.7
1,755,256 - DvMF_1433 0.83 -0.2
1,755,383 - -0.3
1,755,419 - -0.4
1,755,440 + +0.1
1,755,686 - +0.0
1,755,826 + -2.5
1,755,855 + -1.0
1,756,052 + DvMF_1434 0.16 +0.3
1,756,052 + DvMF_1434 0.16 +0.1
1,756,070 - DvMF_1434 0.17 -0.5
1,756,097 - DvMF_1434 0.19 -0.5
1,756,181 - DvMF_1434 0.25 -0.6
1,756,521 - DvMF_1434 0.47 -0.6
1,756,571 + DvMF_1434 0.51 -0.9
1,756,865 + DvMF_1434 0.70 -0.2
1,756,909 - DvMF_1434 0.73 -1.4
1,756,909 - DvMF_1434 0.73 -0.7
1,756,990 + DvMF_1434 0.79 -1.0
1,756,998 - DvMF_1434 0.79 -0.9
1,757,068 + DvMF_1434 0.84 -0.6
1,757,068 + DvMF_1434 0.84 +0.1
1,757,317 + +0.2
1,757,567 - -0.9
1,757,605 + -1.7
1,757,630 - -1.2
1,757,834 - DvMF_1435 0.54 -0.5
1,757,894 + DvMF_1435 0.67 -0.8
1,758,077 - -0.0
1,758,077 - -0.5
1,758,160 + -0.4
1,758,243 + -0.8
1,758,274 - -0.9

Or see this region's nucleotide sequence