Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1389

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1387 and DvMF_1388 are separated by 3 nucleotidesDvMF_1388 and DvMF_1389 are separated by 138 nucleotidesDvMF_1389 and DvMF_1390 are separated by 112 nucleotides DvMF_1387: DvMF_1387 - ATP synthase I (RefSeq), at 1,695,665 to 1,696,099 _1387 DvMF_1388: DvMF_1388 - ATP synthase F0, A subunit (RefSeq), at 1,696,103 to 1,696,804 _1388 DvMF_1389: DvMF_1389 - ATP synthase F0, C subunit (RefSeq), at 1,696,943 to 1,697,272 _1389 DvMF_1390: DvMF_1390 - redox-sensing transcriptional repressor Rex (RefSeq), at 1,697,385 to 1,698,032 _1390 Position (kb) 1696 1697 1698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1697.332 kb on + strandat 1698.108 kb on + strandat 1698.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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1,697,332 + -2.9
1,698,108 + -1.0
1,698,233 - +1.8

Or see this region's nucleotide sequence