Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1189

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1188 and DvMF_1189 overlap by 4 nucleotidesDvMF_1189 and DvMF_1190 are separated by 302 nucleotides DvMF_1188: DvMF_1188 - Radical SAM domain protein (RefSeq), at 1,466,201 to 1,467,364 _1188 DvMF_1189: DvMF_1189 - Radical SAM domain protein (RefSeq), at 1,467,361 to 1,468,521 _1189 DvMF_1190: DvMF_1190 - protein of unknown function DUF178 (RefSeq), at 1,468,824 to 1,469,678 _1190 Position (kb) 1467 1468 1469Strain fitness (log2 ratio) -1 0 1 2 3at 1467.297 kb on - strandat 1467.297 kb on - strandat 1468.485 kb on + strandat 1468.573 kb on - strandat 1468.596 kb on - strandat 1468.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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1,467,297 - -0.7
1,467,297 - -1.6
1,468,485 + -0.2
1,468,573 - +2.9
1,468,596 - -0.4
1,468,750 - +0.3

Or see this region's nucleotide sequence