Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1187

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1185 and DvMF_1186 are separated by 9 nucleotidesDvMF_1186 and DvMF_1187 are separated by 73 nucleotidesDvMF_1187 and DvMF_1188 are separated by 380 nucleotides DvMF_1185: DvMF_1185 - extracellular solute-binding protein family 3 (RefSeq), at 1,463,957 to 1,464,730 _1185 DvMF_1186: DvMF_1186 - no description, at 1,464,740 to 1,464,853 _1186 DvMF_1187: DvMF_1187 - protein of unknown function DUF191 (RefSeq), at 1,464,927 to 1,465,820 _1187 DvMF_1188: DvMF_1188 - Radical SAM domain protein (RefSeq), at 1,466,201 to 1,467,364 _1188 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -1 0 1 2at 1463.967 kb on + strandat 1463.980 kb on - strandat 1464.227 kb on + strand, within DvMF_1185at 1464.526 kb on + strand, within DvMF_1185at 1465.976 kb on - strandat 1466.010 kb on - strandat 1466.108 kb on + strandat 1466.111 kb on - strandat 1466.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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1,463,967 + -1.4
1,463,980 - -0.8
1,464,227 + DvMF_1185 0.35 -0.5
1,464,526 + DvMF_1185 0.74 -1.1
1,465,976 - -0.3
1,466,010 - +2.0
1,466,108 + -0.4
1,466,111 - -0.8
1,466,190 + +0.1

Or see this region's nucleotide sequence