Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1113 and DvMF_1114 are separated by 145 nucleotides DvMF_1114 and DvMF_1115 are separated by 475 nucleotides
DvMF_1113: DvMF_1113 - hypothetical protein (RefSeq), at 1,362,461 to 1,363,273
_1113
DvMF_1114: DvMF_1114 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,363,419 to 1,365,521
_1114
DvMF_1115: DvMF_1115 - thioesterase superfamily protein (RefSeq), at 1,365,997 to 1,366,413
_1115
Position (kb)
1363
1364
1365
1366 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1362.537 kb on + strand at 1362.645 kb on + strand, within DvMF_1113 at 1362.981 kb on - strand, within DvMF_1113 at 1362.981 kb on - strand, within DvMF_1113 at 1363.029 kb on - strand, within DvMF_1113 at 1363.093 kb on - strand, within DvMF_1113 at 1363.112 kb on + strand, within DvMF_1113 at 1363.290 kb on + strand at 1363.298 kb on - strand at 1363.343 kb on - strand at 1363.370 kb on + strand at 1363.396 kb on - strand at 1363.465 kb on + strand at 1363.752 kb on + strand, within DvMF_1114 at 1363.774 kb on + strand, within DvMF_1114 at 1363.848 kb on + strand, within DvMF_1114 at 1363.989 kb on - strand, within DvMF_1114 at 1364.529 kb on + strand, within DvMF_1114 at 1364.714 kb on + strand, within DvMF_1114 at 1364.838 kb on - strand, within DvMF_1114 at 1364.959 kb on + strand, within DvMF_1114 at 1365.052 kb on - strand, within DvMF_1114 at 1365.149 kb on - strand, within DvMF_1114 at 1365.192 kb on - strand, within DvMF_1114 at 1365.360 kb on + strand at 1365.587 kb on + strand at 1365.630 kb on - strand at 1365.676 kb on + strand at 1365.758 kb on - strand at 1366.145 kb on + strand, within DvMF_1115 at 1366.167 kb on + strand, within DvMF_1115 at 1366.212 kb on + strand, within DvMF_1115 at 1366.317 kb on - strand, within DvMF_1115 at 1366.322 kb on - strand, within DvMF_1115 at 1366.352 kb on - strand, within DvMF_1115
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 1,362,537 + -0.5 1,362,645 + DvMF_1113 0.23 -0.5 1,362,981 - DvMF_1113 0.64 -0.5 1,362,981 - DvMF_1113 0.64 -0.5 1,363,029 - DvMF_1113 0.70 -0.8 1,363,093 - DvMF_1113 0.78 -0.5 1,363,112 + DvMF_1113 0.80 -0.9 1,363,290 + -0.7 1,363,298 - -0.7 1,363,343 - -1.0 1,363,370 + -1.4 1,363,396 - +0.0 1,363,465 + -0.6 1,363,752 + DvMF_1114 0.16 -0.9 1,363,774 + DvMF_1114 0.17 -0.3 1,363,848 + DvMF_1114 0.20 -0.4 1,363,989 - DvMF_1114 0.27 -0.7 1,364,529 + DvMF_1114 0.53 -0.4 1,364,714 + DvMF_1114 0.62 -0.1 1,364,838 - DvMF_1114 0.67 -0.4 1,364,959 + DvMF_1114 0.73 -0.3 1,365,052 - DvMF_1114 0.78 -0.5 1,365,149 - DvMF_1114 0.82 -2.1 1,365,192 - DvMF_1114 0.84 -0.3 1,365,360 + +0.1 1,365,587 + -2.9 1,365,630 - +0.0 1,365,676 + -0.1 1,365,758 - -0.2 1,366,145 + DvMF_1115 0.35 -3.2 1,366,167 + DvMF_1115 0.41 -0.5 1,366,212 + DvMF_1115 0.52 -0.2 1,366,317 - DvMF_1115 0.77 -1.3 1,366,322 - DvMF_1115 0.78 -3.6 1,366,352 - DvMF_1115 0.85 +0.0
Or see this region's nucleotide sequence