Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1033

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1031 and DvMF_1032 are separated by 319 nucleotidesDvMF_1032 and DvMF_1033 overlap by 4 nucleotidesDvMF_1033 and DvMF_1034 are separated by 11 nucleotides DvMF_1031: DvMF_1031 - twitching motility protein (RefSeq), at 1,251,284 to 1,252,585 _1031 DvMF_1032: DvMF_1032 - hypothetical protein (RefSeq), at 1,252,905 to 1,253,342 _1032 DvMF_1033: DvMF_1033 - hypothetical protein (RefSeq), at 1,253,339 to 1,253,809 _1033 DvMF_1034: DvMF_1034 - hypothetical protein (RefSeq), at 1,253,821 to 1,257,135 _1034 Position (kb) 1253 1254Strain fitness (log2 ratio) -3 -2 -1 0 1at 1252.496 kb on + strandat 1252.505 kb on + strandat 1252.523 kb on + strandat 1252.531 kb on - strandat 1252.600 kb on - strandat 1252.723 kb on - strandat 1252.738 kb on + strandat 1252.775 kb on + strandat 1253.270 kb on - strand, within DvMF_1032at 1253.272 kb on + strand, within DvMF_1032at 1253.280 kb on - strand, within DvMF_1032at 1253.287 kb on + strand, within DvMF_1032at 1253.295 kb on - strand, within DvMF_1032at 1253.564 kb on - strand, within DvMF_1033at 1253.629 kb on + strand, within DvMF_1033at 1253.842 kb on - strandat 1254.071 kb on + strandat 1254.356 kb on + strand, within DvMF_1034at 1254.363 kb on + strand, within DvMF_1034at 1254.371 kb on - strand, within DvMF_1034at 1254.697 kb on + strand, within DvMF_1034at 1254.794 kb on - strand, within DvMF_1034

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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1,252,496 + -0.1
1,252,505 + -1.2
1,252,523 + -0.7
1,252,531 - +0.2
1,252,600 - -0.2
1,252,723 - +0.2
1,252,738 + +0.1
1,252,775 + +0.6
1,253,270 - DvMF_1032 0.83 -1.5
1,253,272 + DvMF_1032 0.84 +1.0
1,253,280 - DvMF_1032 0.86 -0.5
1,253,287 + DvMF_1032 0.87 +0.3
1,253,295 - DvMF_1032 0.89 -0.0
1,253,564 - DvMF_1033 0.48 +0.5
1,253,629 + DvMF_1033 0.62 +0.1
1,253,842 - -0.1
1,254,071 + -1.2
1,254,356 + DvMF_1034 0.16 -0.2
1,254,363 + DvMF_1034 0.16 -2.8
1,254,371 - DvMF_1034 0.17 -1.0
1,254,697 + DvMF_1034 0.26 -0.0
1,254,794 - DvMF_1034 0.29 -0.3

Or see this region's nucleotide sequence