Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1021

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1020 and DvMF_1021 are separated by 318 nucleotidesDvMF_1021 and DvMF_1022 are separated by 151 nucleotides DvMF_1020: DvMF_1020 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 1,236,422 to 1,237,498 _1020 DvMF_1021: DvMF_1021 - two component transcriptional regulator, LuxR family (RefSeq), at 1,237,817 to 1,238,467 _1021 DvMF_1022: DvMF_1022 - hypothetical protein (RefSeq), at 1,238,619 to 1,239,476 _1022 Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -1 0 1 2 3at 1236.991 kb on - strand, within DvMF_1020at 1237.227 kb on + strand, within DvMF_1020at 1237.680 kb on - strandat 1237.866 kb on + strandat 1237.875 kb on - strandat 1238.352 kb on - strand, within DvMF_1021at 1238.364 kb on - strand, within DvMF_1021at 1238.423 kb on - strandat 1238.838 kb on + strand, within DvMF_1022at 1238.909 kb on + strand, within DvMF_1022at 1238.909 kb on + strand, within DvMF_1022at 1238.917 kb on - strand, within DvMF_1022at 1239.266 kb on + strand, within DvMF_1022at 1239.295 kb on + strand, within DvMF_1022

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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1,236,991 - DvMF_1020 0.53 -0.0
1,237,227 + DvMF_1020 0.75 -0.3
1,237,680 - +1.1
1,237,866 + +1.4
1,237,875 - +2.9
1,238,352 - DvMF_1021 0.82 +1.4
1,238,364 - DvMF_1021 0.84 +0.9
1,238,423 - +0.8
1,238,838 + DvMF_1022 0.26 +1.0
1,238,909 + DvMF_1022 0.34 +1.4
1,238,909 + DvMF_1022 0.34 +0.8
1,238,917 - DvMF_1022 0.35 +0.6
1,239,266 + DvMF_1022 0.75 +1.2
1,239,295 + DvMF_1022 0.79 +1.0

Or see this region's nucleotide sequence