Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1012 and DvMF_1013 are separated by 210 nucleotides DvMF_1013 and DvMF_1014 are separated by 156 nucleotides DvMF_1014 and DvMF_1015 are separated by 356 nucleotides
DvMF_1012: DvMF_1012 - amidohydrolase (RefSeq), at 1,227,604 to 1,228,806
_1012
DvMF_1013: DvMF_1013 - peptidylprolyl isomerase FKBP-type (RefSeq), at 1,229,017 to 1,229,439
_1013
DvMF_1014: DvMF_1014 - diguanylate cyclase (RefSeq), at 1,229,596 to 1,231,254
_1014
DvMF_1015: DvMF_1015 - ferrous iron transport protein B (RefSeq), at 1,231,611 to 1,233,890
_1015
Position (kb)
1229
1230
1231
1232 Strain fitness (log2 ratio)
-2
-1
0
1 at 1228.770 kb on - strand at 1228.870 kb on - strand at 1228.923 kb on + strand at 1228.938 kb on - strand at 1229.222 kb on - strand, within DvMF_1013 at 1229.315 kb on - strand, within DvMF_1013 at 1229.585 kb on - strand at 1229.645 kb on - strand at 1229.753 kb on + strand at 1229.804 kb on - strand, within DvMF_1014 at 1229.860 kb on - strand, within DvMF_1014 at 1230.015 kb on - strand, within DvMF_1014 at 1230.188 kb on - strand, within DvMF_1014 at 1230.381 kb on + strand, within DvMF_1014 at 1230.745 kb on - strand, within DvMF_1014 at 1230.774 kb on + strand, within DvMF_1014 at 1231.011 kb on + strand, within DvMF_1014 at 1231.019 kb on - strand, within DvMF_1014 at 1231.019 kb on - strand, within DvMF_1014 at 1231.140 kb on + strand at 1231.140 kb on + strand at 1231.391 kb on - strand at 1231.405 kb on + strand at 1231.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 1,228,770 - -2.7 1,228,870 - -0.4 1,228,923 + +1.1 1,228,938 - -0.3 1,229,222 - DvMF_1013 0.48 -0.6 1,229,315 - DvMF_1013 0.70 -0.3 1,229,585 - -0.7 1,229,645 - -0.8 1,229,753 + -0.4 1,229,804 - DvMF_1014 0.13 +0.4 1,229,860 - DvMF_1014 0.16 -1.0 1,230,015 - DvMF_1014 0.25 -0.9 1,230,188 - DvMF_1014 0.36 -0.4 1,230,381 + DvMF_1014 0.47 -0.9 1,230,745 - DvMF_1014 0.69 -0.5 1,230,774 + DvMF_1014 0.71 -0.1 1,231,011 + DvMF_1014 0.85 -2.2 1,231,019 - DvMF_1014 0.86 +0.1 1,231,019 - DvMF_1014 0.86 -0.2 1,231,140 + +0.2 1,231,140 + -0.4 1,231,391 - +0.1 1,231,405 + -0.6 1,231,615 + -0.4
Or see this region's nucleotide sequence