Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1013

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1012 and DvMF_1013 are separated by 210 nucleotidesDvMF_1013 and DvMF_1014 are separated by 156 nucleotides DvMF_1012: DvMF_1012 - amidohydrolase (RefSeq), at 1,227,604 to 1,228,806 _1012 DvMF_1013: DvMF_1013 - peptidylprolyl isomerase FKBP-type (RefSeq), at 1,229,017 to 1,229,439 _1013 DvMF_1014: DvMF_1014 - diguanylate cyclase (RefSeq), at 1,229,596 to 1,231,254 _1014 Position (kb) 1229 1230Strain fitness (log2 ratio) -2 -1 0 1at 1228.019 kb on - strand, within DvMF_1012at 1228.115 kb on - strand, within DvMF_1012at 1228.156 kb on + strand, within DvMF_1012at 1228.328 kb on - strand, within DvMF_1012at 1228.348 kb on + strand, within DvMF_1012at 1228.580 kb on + strand, within DvMF_1012at 1228.584 kb on + strand, within DvMF_1012at 1228.770 kb on - strandat 1228.870 kb on - strandat 1228.923 kb on + strandat 1228.938 kb on - strandat 1229.222 kb on - strand, within DvMF_1013at 1229.315 kb on - strand, within DvMF_1013at 1229.585 kb on - strandat 1229.645 kb on - strandat 1229.753 kb on + strandat 1229.804 kb on - strand, within DvMF_1014at 1229.860 kb on - strand, within DvMF_1014at 1230.015 kb on - strand, within DvMF_1014at 1230.188 kb on - strand, within DvMF_1014at 1230.381 kb on + strand, within DvMF_1014

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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1,228,019 - DvMF_1012 0.34 -0.5
1,228,115 - DvMF_1012 0.42 -0.5
1,228,156 + DvMF_1012 0.46 -0.5
1,228,328 - DvMF_1012 0.60 -1.3
1,228,348 + DvMF_1012 0.62 -0.8
1,228,580 + DvMF_1012 0.81 -2.7
1,228,584 + DvMF_1012 0.81 -1.0
1,228,770 - -2.7
1,228,870 - -0.4
1,228,923 + +1.1
1,228,938 - -0.3
1,229,222 - DvMF_1013 0.48 -0.6
1,229,315 - DvMF_1013 0.70 -0.3
1,229,585 - -0.7
1,229,645 - -0.8
1,229,753 + -0.4
1,229,804 - DvMF_1014 0.13 +0.4
1,229,860 - DvMF_1014 0.16 -1.0
1,230,015 - DvMF_1014 0.25 -0.9
1,230,188 - DvMF_1014 0.36 -0.4
1,230,381 + DvMF_1014 0.47 -0.9

Or see this region's nucleotide sequence