Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1011 and DvMF_1012 are separated by 481 nucleotides DvMF_1012 and DvMF_1013 are separated by 210 nucleotides DvMF_1013 and DvMF_1014 are separated by 156 nucleotides
DvMF_1011: DvMF_1011 - transcriptional regulator, TrmB (RefSeq), at 1,226,349 to 1,227,122
_1011
DvMF_1012: DvMF_1012 - amidohydrolase (RefSeq), at 1,227,604 to 1,228,806
_1012
DvMF_1013: DvMF_1013 - peptidylprolyl isomerase FKBP-type (RefSeq), at 1,229,017 to 1,229,439
_1013
DvMF_1014: DvMF_1014 - diguanylate cyclase (RefSeq), at 1,229,596 to 1,231,254
_1014
Position (kb)
1227
1228
1229 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1226.659 kb on - strand, within DvMF_1011 at 1226.681 kb on - strand, within DvMF_1011 at 1226.781 kb on - strand, within DvMF_1011 at 1227.058 kb on - strand at 1227.231 kb on - strand at 1227.745 kb on - strand, within DvMF_1012 at 1227.870 kb on + strand, within DvMF_1012 at 1227.870 kb on + strand, within DvMF_1012 at 1227.878 kb on - strand, within DvMF_1012 at 1227.944 kb on - strand, within DvMF_1012 at 1227.986 kb on - strand, within DvMF_1012 at 1228.019 kb on - strand, within DvMF_1012 at 1228.115 kb on - strand, within DvMF_1012 at 1228.156 kb on + strand, within DvMF_1012 at 1228.328 kb on - strand, within DvMF_1012 at 1228.348 kb on + strand, within DvMF_1012 at 1228.580 kb on + strand, within DvMF_1012 at 1228.584 kb on + strand, within DvMF_1012 at 1228.770 kb on - strand at 1228.870 kb on - strand at 1228.923 kb on + strand at 1228.938 kb on - strand at 1229.222 kb on - strand, within DvMF_1013 at 1229.315 kb on - strand, within DvMF_1013 at 1229.585 kb on - strand at 1229.645 kb on - strand at 1229.753 kb on + strand at 1229.804 kb on - strand, within DvMF_1014
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 1,226,659 - DvMF_1011 0.40 -1.8 1,226,681 - DvMF_1011 0.43 -1.3 1,226,781 - DvMF_1011 0.56 -0.8 1,227,058 - -0.9 1,227,231 - -0.4 1,227,745 - DvMF_1012 0.12 -2.9 1,227,870 + DvMF_1012 0.22 -1.4 1,227,870 + DvMF_1012 0.22 -1.2 1,227,878 - DvMF_1012 0.23 -0.8 1,227,944 - DvMF_1012 0.28 -3.0 1,227,986 - DvMF_1012 0.32 -2.2 1,228,019 - DvMF_1012 0.34 -0.5 1,228,115 - DvMF_1012 0.42 -0.5 1,228,156 + DvMF_1012 0.46 -0.5 1,228,328 - DvMF_1012 0.60 -1.3 1,228,348 + DvMF_1012 0.62 -0.8 1,228,580 + DvMF_1012 0.81 -2.7 1,228,584 + DvMF_1012 0.81 -1.0 1,228,770 - -2.7 1,228,870 - -0.4 1,228,923 + +1.1 1,228,938 - -0.3 1,229,222 - DvMF_1013 0.48 -0.6 1,229,315 - DvMF_1013 0.70 -0.3 1,229,585 - -0.7 1,229,645 - -0.8 1,229,753 + -0.4 1,229,804 - DvMF_1014 0.13 +0.4
Or see this region's nucleotide sequence