Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0620

Experiment: MoYLS4 with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0619 and DvMF_0620 overlap by 4 nucleotidesDvMF_0620 and DvMF_0621 are separated by 294 nucleotides DvMF_0619: DvMF_0619 - CheA signal transduction histidine kinase (RefSeq), at 738,048 to 740,432 _0619 DvMF_0620: DvMF_0620 - CheW protein (RefSeq), at 740,429 to 741,067 _0620 DvMF_0621: DvMF_0621 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 741,362 to 743,545 _0621 Position (kb) 740 741 742Strain fitness (log2 ratio) -1 0 1at 739.560 kb on + strand, within DvMF_0619at 739.748 kb on - strand, within DvMF_0619at 739.774 kb on + strand, within DvMF_0619at 739.914 kb on + strand, within DvMF_0619at 740.053 kb on - strand, within DvMF_0619at 740.573 kb on - strand, within DvMF_0620at 740.865 kb on + strand, within DvMF_0620at 741.072 kb on - strandat 741.175 kb on - strandat 741.629 kb on + strand, within DvMF_0621at 741.763 kb on + strand, within DvMF_0621at 741.782 kb on - strand, within DvMF_0621

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM
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739,560 + DvMF_0619 0.63 +1.5
739,748 - DvMF_0619 0.71 +0.1
739,774 + DvMF_0619 0.72 +1.0
739,914 + DvMF_0619 0.78 +0.6
740,053 - DvMF_0619 0.84 +0.8
740,573 - DvMF_0620 0.23 +0.2
740,865 + DvMF_0620 0.68 +0.9
741,072 - +0.3
741,175 - -0.1
741,629 + DvMF_0621 0.12 +0.5
741,763 + DvMF_0621 0.18 -0.7
741,782 - DvMF_0621 0.19 +0.2

Or see this region's nucleotide sequence