Experiment: MoYLS4 with perchlorate 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0143 and DvMF_0144 are separated by 72 nucleotides DvMF_0144 and DvMF_0145 are separated by 125 nucleotides DvMF_0145 and DvMF_0146 overlap by 4 nucleotides DvMF_0146 and DvMF_0147 are separated by 6 nucleotides
DvMF_0143: DvMF_0143 - putative lipoprotein (RefSeq), at 159,913 to 160,863
_0143
DvMF_0144: DvMF_0144 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 160,936 to 161,139
_0144
DvMF_0145: DvMF_0145 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 161,265 to 163,133
_0145
DvMF_0146: DvMF_0146 - hypothetical protein (RefSeq), at 163,130 to 163,639
_0146
DvMF_0147: DvMF_0147 - hypothetical protein (RefSeq), at 163,646 to 164,674
_0147
Position (kb)
161
162
163
164 Strain fitness (log2 ratio)
-2
-1
0
1 at 160.463 kb on + strand, within DvMF_0143 at 160.494 kb on - strand, within DvMF_0143 at 160.558 kb on + strand, within DvMF_0143 at 160.599 kb on + strand, within DvMF_0143 at 161.231 kb on - strand at 161.633 kb on - strand, within DvMF_0145 at 161.709 kb on + strand, within DvMF_0145 at 161.973 kb on - strand, within DvMF_0145 at 162.007 kb on + strand, within DvMF_0145 at 162.033 kb on - strand, within DvMF_0145 at 162.046 kb on + strand, within DvMF_0145 at 162.060 kb on - strand, within DvMF_0145 at 162.060 kb on - strand, within DvMF_0145 at 162.150 kb on + strand, within DvMF_0145 at 162.171 kb on - strand, within DvMF_0145 at 162.423 kb on - strand, within DvMF_0145 at 162.558 kb on - strand, within DvMF_0145 at 162.886 kb on + strand, within DvMF_0145 at 162.886 kb on - strand, within DvMF_0145 at 163.103 kb on - strand at 163.127 kb on + strand at 163.375 kb on - strand, within DvMF_0146 at 163.466 kb on - strand, within DvMF_0146 at 163.624 kb on + strand at 163.624 kb on + strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.682 kb on + strand at 163.690 kb on - strand at 163.874 kb on - strand, within DvMF_0147 at 163.900 kb on + strand, within DvMF_0147 at 163.942 kb on - strand, within DvMF_0147 at 164.022 kb on - strand, within DvMF_0147 at 164.037 kb on - strand, within DvMF_0147 at 164.048 kb on - strand, within DvMF_0147
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with perchlorate 12.5 mM remove 160,463 + DvMF_0143 0.58 -1.9 160,494 - DvMF_0143 0.61 -1.1 160,558 + DvMF_0143 0.68 -1.1 160,599 + DvMF_0143 0.72 -1.5 161,231 - -0.1 161,633 - DvMF_0145 0.20 -0.5 161,709 + DvMF_0145 0.24 -1.0 161,973 - DvMF_0145 0.38 -0.7 162,007 + DvMF_0145 0.40 -1.0 162,033 - DvMF_0145 0.41 +0.6 162,046 + DvMF_0145 0.42 -0.5 162,060 - DvMF_0145 0.43 -0.9 162,060 - DvMF_0145 0.43 -2.5 162,150 + DvMF_0145 0.47 -0.8 162,171 - DvMF_0145 0.48 +0.1 162,423 - DvMF_0145 0.62 -0.7 162,558 - DvMF_0145 0.69 -2.3 162,886 + DvMF_0145 0.87 -1.0 162,886 - DvMF_0145 0.87 -0.3 163,103 - -0.5 163,127 + -0.0 163,375 - DvMF_0146 0.48 -1.2 163,466 - DvMF_0146 0.66 +0.5 163,624 + -0.3 163,624 + -1.1 163,632 - -0.1 163,632 - -0.6 163,632 - -0.9 163,682 + -0.3 163,690 - -0.4 163,874 - DvMF_0147 0.22 -0.6 163,900 + DvMF_0147 0.25 -0.9 163,942 - DvMF_0147 0.29 -0.4 164,022 - DvMF_0147 0.37 -0.8 164,037 - DvMF_0147 0.38 -1.5 164,048 - DvMF_0147 0.39 -0.8
Or see this region's nucleotide sequence