Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3148

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3147 and pgi are separated by 20 nucleotidespgi and Shewana3_3149 are separated by 216 nucleotidesShewana3_3149 and Shewana3_3150 are separated by 67 nucleotides Shewana3_3147: Shewana3_3147 - transaldolase B (RefSeq), at 3,775,351 to 3,776,307 _3147 Shewana3_3148: pgi - glucose-6-phosphate isomerase (RefSeq), at 3,776,328 to 3,777,965 pgi Shewana3_3149: Shewana3_3149 - hypothetical protein (RefSeq), at 3,778,182 to 3,778,367 _3149 Shewana3_3150: Shewana3_3150 - hemerythrin HHE cation binding domain-containing protein (RefSeq), at 3,778,435 to 3,778,971 _3150 Position (kb) 3776 3777 3778Strain fitness (log2 ratio) -1 0 1at 3778.218 kb on + strand, within Shewana3_3149at 3778.448 kb on - strandat 3778.453 kb on - strandat 3778.727 kb on - strand, within Shewana3_3150at 3778.851 kb on - strand, within Shewana3_3150

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,778,218 + Shewana3_3149 0.19 +0.2
3,778,448 - +0.7
3,778,453 - +1.0
3,778,727 - Shewana3_3150 0.54 +0.4
3,778,851 - Shewana3_3150 0.77 +0.2

Or see this region's nucleotide sequence