Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3113 and Shewana3_3114 are separated by 58 nucleotides Shewana3_3114 and Shewana3_3115 are separated by 224 nucleotides
Shewana3_3113: Shewana3_3113 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) , at 3,733,732 to 3,734,730
_3113
Shewana3_3114: Shewana3_3114 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data) , at 3,734,789 to 3,735,697
_3114
Shewana3_3115: Shewana3_3115 - beta-N-acetylhexosaminidase (RefSeq), at 3,735,922 to 3,738,729
_3115
Position (kb)
3734
3735
3736 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3733.893 kb on - strand, within Shewana3_3113 at 3733.937 kb on + strand, within Shewana3_3113 at 3733.937 kb on + strand, within Shewana3_3113 at 3734.010 kb on + strand, within Shewana3_3113 at 3734.031 kb on - strand, within Shewana3_3113 at 3734.031 kb on - strand, within Shewana3_3113 at 3734.092 kb on + strand, within Shewana3_3113 at 3734.283 kb on - strand, within Shewana3_3113 at 3734.831 kb on + strand at 3735.107 kb on + strand, within Shewana3_3114 at 3735.223 kb on - strand, within Shewana3_3114 at 3735.244 kb on + strand, within Shewana3_3114 at 3735.275 kb on + strand, within Shewana3_3114 at 3735.455 kb on + strand, within Shewana3_3114 at 3735.455 kb on + strand, within Shewana3_3114 at 3735.457 kb on - strand, within Shewana3_3114 at 3735.463 kb on - strand, within Shewana3_3114 at 3735.978 kb on + strand at 3735.986 kb on - strand at 3735.986 kb on - strand at 3736.024 kb on - strand at 3736.024 kb on - strand at 3736.083 kb on - strand at 3736.370 kb on + strand, within Shewana3_3115 at 3736.378 kb on - strand, within Shewana3_3115 at 3736.378 kb on - strand, within Shewana3_3115 at 3736.451 kb on + strand, within Shewana3_3115 at 3736.453 kb on - strand, within Shewana3_3115 at 3736.498 kb on - strand, within Shewana3_3115 at 3736.505 kb on - strand, within Shewana3_3115 at 3736.532 kb on - strand, within Shewana3_3115 at 3736.578 kb on - strand, within Shewana3_3115 at 3736.584 kb on + strand, within Shewana3_3115 at 3736.611 kb on - strand, within Shewana3_3115 at 3736.623 kb on - strand, within Shewana3_3115 at 3736.631 kb on - strand, within Shewana3_3115 at 3736.646 kb on + strand, within Shewana3_3115 at 3736.678 kb on + strand, within Shewana3_3115 at 3736.678 kb on + strand, within Shewana3_3115
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,733,893 - Shewana3_3113 0.16 -4.8 3,733,937 + Shewana3_3113 0.21 -3.8 3,733,937 + Shewana3_3113 0.21 -4.1 3,734,010 + Shewana3_3113 0.28 -3.4 3,734,031 - Shewana3_3113 0.30 -3.8 3,734,031 - Shewana3_3113 0.30 -5.1 3,734,092 + Shewana3_3113 0.36 -4.8 3,734,283 - Shewana3_3113 0.55 -4.0 3,734,831 + -3.1 3,735,107 + Shewana3_3114 0.35 -3.8 3,735,223 - Shewana3_3114 0.48 -3.9 3,735,244 + Shewana3_3114 0.50 -4.7 3,735,275 + Shewana3_3114 0.53 -4.2 3,735,455 + Shewana3_3114 0.73 -5.0 3,735,455 + Shewana3_3114 0.73 -4.7 3,735,457 - Shewana3_3114 0.73 -5.0 3,735,463 - Shewana3_3114 0.74 -2.7 3,735,978 + -0.7 3,735,986 - -1.0 3,735,986 - -1.1 3,736,024 - -1.9 3,736,024 - -1.6 3,736,083 - -0.4 3,736,370 + Shewana3_3115 0.16 -0.8 3,736,378 - Shewana3_3115 0.16 -1.7 3,736,378 - Shewana3_3115 0.16 +0.4 3,736,451 + Shewana3_3115 0.19 +0.4 3,736,453 - Shewana3_3115 0.19 -0.6 3,736,498 - Shewana3_3115 0.21 +0.1 3,736,505 - Shewana3_3115 0.21 -0.7 3,736,532 - Shewana3_3115 0.22 -0.3 3,736,578 - Shewana3_3115 0.23 -0.3 3,736,584 + Shewana3_3115 0.24 -1.2 3,736,611 - Shewana3_3115 0.25 +0.4 3,736,623 - Shewana3_3115 0.25 -0.9 3,736,631 - Shewana3_3115 0.25 -0.1 3,736,646 + Shewana3_3115 0.26 -1.0 3,736,678 + Shewana3_3115 0.27 -0.8 3,736,678 + Shewana3_3115 0.27 -0.0
Or see this region's nucleotide sequence