Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2370 and Shewana3_2371 are separated by 263 nucleotides Shewana3_2371 and Shewana3_2372 are separated by 2 nucleotides
Shewana3_2370: Shewana3_2370 - MltD domain-containing protein (RefSeq), at 2,848,212 to 2,849,759
_2370
Shewana3_2371: Shewana3_2371 - intracellular proteinase inhibitor domain-containing protein (RefSeq), at 2,850,023 to 2,850,682
_2371
Shewana3_2372: Shewana3_2372 - AsmA protein (RefSeq), at 2,850,685 to 2,852,505
_2372
Position (kb)
2850
2851 Strain fitness (log2 ratio)
-2
-1
0
1 at 2849.058 kb on - strand, within Shewana3_2370 at 2849.475 kb on - strand, within Shewana3_2370 at 2849.769 kb on - strand at 2849.804 kb on + strand at 2850.048 kb on - strand at 2850.202 kb on + strand, within Shewana3_2371 at 2850.385 kb on + strand, within Shewana3_2371 at 2850.554 kb on - strand, within Shewana3_2371 at 2850.737 kb on - strand at 2850.873 kb on - strand, within Shewana3_2372 at 2850.894 kb on - strand, within Shewana3_2372 at 2850.948 kb on - strand, within Shewana3_2372 at 2851.053 kb on + strand, within Shewana3_2372 at 2851.098 kb on - strand, within Shewana3_2372 at 2851.438 kb on + strand, within Shewana3_2372 at 2851.486 kb on - strand, within Shewana3_2372
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,849,058 - Shewana3_2370 0.55 +1.5 2,849,475 - Shewana3_2370 0.82 -0.8 2,849,769 - +0.2 2,849,804 + +0.4 2,850,048 - +0.2 2,850,202 + Shewana3_2371 0.27 -1.3 2,850,385 + Shewana3_2371 0.55 +0.4 2,850,554 - Shewana3_2371 0.80 +0.1 2,850,737 - -0.4 2,850,873 - Shewana3_2372 0.10 +1.1 2,850,894 - Shewana3_2372 0.11 -1.1 2,850,948 - Shewana3_2372 0.14 +0.8 2,851,053 + Shewana3_2372 0.20 +0.6 2,851,098 - Shewana3_2372 0.23 +0.1 2,851,438 + Shewana3_2372 0.41 -2.0 2,851,486 - Shewana3_2372 0.44 +0.1
Or see this region's nucleotide sequence