Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2330

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2329 and Shewana3_2330 are separated by 23 nucleotidesShewana3_2330 and Shewana3_2331 are separated by 74 nucleotidesShewana3_2331 and Shewana3_2332 are separated by 6 nucleotidesShewana3_2332 and Shewana3_2333 are separated by 10 nucleotides Shewana3_2329: Shewana3_2329 - major facilitator transporter (RefSeq), at 2,805,626 to 2,806,864 _2329 Shewana3_2330: Shewana3_2330 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,806,888 to 2,807,898 _2330 Shewana3_2331: Shewana3_2331 - protein tyrosine phosphatase, catalytic region (RefSeq), at 2,807,973 to 2,808,464 _2331 Shewana3_2332: Shewana3_2332 - redox-active disulfide protein 2 (RefSeq), at 2,808,471 to 2,808,707 _2332 Shewana3_2333: Shewana3_2333 - permease (RefSeq), at 2,808,718 to 2,809,716 _2333 Position (kb) 2806 2807 2808Strain fitness (log2 ratio) -2 -1 0 1at 2805.888 kb on - strand, within Shewana3_2329at 2805.924 kb on + strand, within Shewana3_2329at 2805.989 kb on - strand, within Shewana3_2329at 2806.046 kb on + strand, within Shewana3_2329at 2806.054 kb on - strand, within Shewana3_2329at 2806.054 kb on - strand, within Shewana3_2329at 2806.054 kb on - strand, within Shewana3_2329at 2806.066 kb on + strand, within Shewana3_2329at 2806.439 kb on + strand, within Shewana3_2329at 2806.520 kb on + strand, within Shewana3_2329at 2806.553 kb on - strand, within Shewana3_2329at 2806.647 kb on - strand, within Shewana3_2329at 2806.723 kb on + strand, within Shewana3_2329at 2806.726 kb on - strand, within Shewana3_2329at 2806.731 kb on - strand, within Shewana3_2329at 2806.940 kb on + strandat 2806.973 kb on + strandat 2806.981 kb on - strandat 2807.302 kb on - strand, within Shewana3_2330at 2807.442 kb on - strand, within Shewana3_2330at 2807.449 kb on - strand, within Shewana3_2330at 2807.522 kb on + strand, within Shewana3_2330at 2807.668 kb on - strand, within Shewana3_2330at 2807.740 kb on + strandat 2807.847 kb on + strandat 2807.855 kb on - strandat 2808.121 kb on - strand, within Shewana3_2331at 2808.203 kb on - strand, within Shewana3_2331at 2808.203 kb on - strand, within Shewana3_2331at 2808.293 kb on + strand, within Shewana3_2331at 2808.293 kb on + strand, within Shewana3_2331at 2808.293 kb on + strand, within Shewana3_2331at 2808.567 kb on + strand, within Shewana3_2332at 2808.666 kb on - strand, within Shewana3_2332

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,805,888 - Shewana3_2329 0.21 -0.5
2,805,924 + Shewana3_2329 0.24 -1.2
2,805,989 - Shewana3_2329 0.29 -0.1
2,806,046 + Shewana3_2329 0.34 +0.8
2,806,054 - Shewana3_2329 0.35 +0.2
2,806,054 - Shewana3_2329 0.35 -1.8
2,806,054 - Shewana3_2329 0.35 -1.0
2,806,066 + Shewana3_2329 0.36 +1.2
2,806,439 + Shewana3_2329 0.66 -1.4
2,806,520 + Shewana3_2329 0.72 +0.7
2,806,553 - Shewana3_2329 0.75 -0.4
2,806,647 - Shewana3_2329 0.82 -0.5
2,806,723 + Shewana3_2329 0.89 +0.8
2,806,726 - Shewana3_2329 0.89 +0.6
2,806,731 - Shewana3_2329 0.89 +0.5
2,806,940 + -0.7
2,806,973 + +1.1
2,806,981 - +0.4
2,807,302 - Shewana3_2330 0.41 -0.5
2,807,442 - Shewana3_2330 0.55 -1.6
2,807,449 - Shewana3_2330 0.55 -0.9
2,807,522 + Shewana3_2330 0.63 -0.8
2,807,668 - Shewana3_2330 0.77 +0.1
2,807,740 + +1.6
2,807,847 + +1.1
2,807,855 - -2.0
2,808,121 - Shewana3_2331 0.30 +0.7
2,808,203 - Shewana3_2331 0.47 +0.4
2,808,203 - Shewana3_2331 0.47 +0.8
2,808,293 + Shewana3_2331 0.65 -0.2
2,808,293 + Shewana3_2331 0.65 +0.1
2,808,293 + Shewana3_2331 0.65 +0.4
2,808,567 + Shewana3_2332 0.41 -1.1
2,808,666 - Shewana3_2332 0.82 -0.9

Or see this region's nucleotide sequence