Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt def and Shewana3_2320 are separated by 192 nucleotides Shewana3_2320 and Shewana3_2321 are separated by 129 nucleotides Shewana3_2321 and Shewana3_2322 are separated by 163 nucleotides
Shewana3_2319: def - peptide deformylase (RefSeq), at 2,792,153 to 2,792,644
def
Shewana3_2320: Shewana3_2320 - methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq), at 2,792,837 to 2,793,295
_2320
Shewana3_2321: Shewana3_2321 - hypothetical protein (RefSeq), at 2,793,425 to 2,794,237
_2321
Shewana3_2322: Shewana3_2322 - glutamine amidotransferase, class-II (RefSeq), at 2,794,401 to 2,795,240
_2322
Position (kb)
2793
2794
2795 Strain fitness (log2 ratio)
-1
0
1 at 2792.903 kb on - strand, within Shewana3_2320 at 2792.913 kb on - strand, within Shewana3_2320 at 2793.055 kb on - strand, within Shewana3_2320 at 2793.072 kb on + strand, within Shewana3_2320 at 2793.215 kb on - strand, within Shewana3_2320 at 2793.327 kb on - strand at 2793.349 kb on - strand at 2793.473 kb on - strand at 2793.717 kb on - strand, within Shewana3_2321 at 2793.723 kb on + strand, within Shewana3_2321 at 2793.765 kb on + strand, within Shewana3_2321 at 2793.928 kb on - strand, within Shewana3_2321 at 2793.990 kb on - strand, within Shewana3_2321 at 2794.043 kb on + strand, within Shewana3_2321 at 2794.306 kb on + strand at 2794.851 kb on - strand, within Shewana3_2322 at 2794.937 kb on - strand, within Shewana3_2322 at 2794.977 kb on - strand, within Shewana3_2322 at 2795.109 kb on - strand, within Shewana3_2322
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,792,903 - Shewana3_2320 0.14 -0.2 2,792,913 - Shewana3_2320 0.17 +0.2 2,793,055 - Shewana3_2320 0.47 -0.6 2,793,072 + Shewana3_2320 0.51 -0.7 2,793,215 - Shewana3_2320 0.82 +0.4 2,793,327 - -1.3 2,793,349 - +0.7 2,793,473 - -0.8 2,793,717 - Shewana3_2321 0.36 +0.2 2,793,723 + Shewana3_2321 0.37 +0.5 2,793,765 + Shewana3_2321 0.42 -0.1 2,793,928 - Shewana3_2321 0.62 +0.3 2,793,990 - Shewana3_2321 0.69 +1.1 2,794,043 + Shewana3_2321 0.76 +0.5 2,794,306 + -0.4 2,794,851 - Shewana3_2322 0.54 +0.4 2,794,937 - Shewana3_2322 0.64 -1.0 2,794,977 - Shewana3_2322 0.69 +0.0 2,795,109 - Shewana3_2322 0.84 -0.7
Or see this region's nucleotide sequence