Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2134

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2132 and Shewana3_2133 are separated by 277 nucleotidesShewana3_2133 and Shewana3_2134 are separated by 118 nucleotidesShewana3_2134 and Shewana3_2135 are separated by 71 nucleotidesShewana3_2135 and Shewana3_2136 are separated by 271 nucleotides Shewana3_2132: Shewana3_2132 - succinylglutamate desuccinylase (RefSeq), at 2,557,823 to 2,558,857 _2132 Shewana3_2133: Shewana3_2133 - peptide methionine sulfoxide reductase (RefSeq), at 2,559,135 to 2,559,614 _2133 Shewana3_2134: Shewana3_2134 - phosphoglucomutase (RefSeq), at 2,559,733 to 2,561,385 _2134 Shewana3_2135: Shewana3_2135 - replication initiation regulator SeqA (RefSeq), at 2,561,457 to 2,562,008 _2135 Shewana3_2136: Shewana3_2136 - alpha/beta hydrolase fold (RefSeq), at 2,562,280 to 2,563,080 _2136 Position (kb) 2559 2560 2561 2562Strain fitness (log2 ratio) -2 -1 0 1at 2558.803 kb on - strandat 2559.042 kb on + strandat 2559.210 kb on + strand, within Shewana3_2133at 2559.506 kb on - strand, within Shewana3_2133at 2559.561 kb on + strand, within Shewana3_2133at 2561.465 kb on - strandat 2562.111 kb on - strandat 2562.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,558,803 - -2.1
2,559,042 + -0.2
2,559,210 + Shewana3_2133 0.16 -0.1
2,559,506 - Shewana3_2133 0.77 -0.3
2,559,561 + Shewana3_2133 0.89 +0.7
2,561,465 - +0.9
2,562,111 - -0.4
2,562,211 - +0.7

Or see this region's nucleotide sequence