Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2059 and Shewana3_2060 are separated by 56 nucleotides Shewana3_2060 and Shewana3_2061 are separated by 259 nucleotides Shewana3_2061 and Shewana3_2062 are separated by 106 nucleotides
Shewana3_2059: Shewana3_2059 - DsrE family protein (RefSeq), at 2,465,566 to 2,465,958
_2059
Shewana3_2060: Shewana3_2060 - hypothetical protein (RefSeq), at 2,466,015 to 2,466,674
_2060
Shewana3_2061: Shewana3_2061 - putative DNA-binding transcriptional regulator (RefSeq), at 2,466,934 to 2,467,845
_2061
Shewana3_2062: Shewana3_2062 - inner membrane transport protein YdhC (RefSeq), at 2,467,952 to 2,469,223
_2062
Position (kb)
2466
2467
2468 Strain fitness (log2 ratio)
-1
0
1
2 at 2466.070 kb on - strand at 2466.802 kb on - strand at 2466.890 kb on - strand at 2466.915 kb on - strand at 2467.140 kb on + strand, within Shewana3_2061 at 2467.411 kb on + strand, within Shewana3_2061 at 2467.555 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061 at 2468.141 kb on + strand, within Shewana3_2062 at 2468.304 kb on + strand, within Shewana3_2062 at 2468.625 kb on + strand, within Shewana3_2062 at 2468.785 kb on + strand, within Shewana3_2062 at 2468.796 kb on + strand, within Shewana3_2062
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,466,070 - +0.7 2,466,802 - -1.1 2,466,890 - -0.2 2,466,915 - +0.5 2,467,140 + Shewana3_2061 0.23 +0.3 2,467,411 + Shewana3_2061 0.52 -0.5 2,467,555 - Shewana3_2061 0.68 +1.5 2,467,668 - Shewana3_2061 0.80 +2.0 2,467,668 - Shewana3_2061 0.80 -0.1 2,468,141 + Shewana3_2062 0.15 +0.7 2,468,304 + Shewana3_2062 0.28 +0.8 2,468,625 + Shewana3_2062 0.53 +0.5 2,468,785 + Shewana3_2062 0.65 -0.5 2,468,796 + Shewana3_2062 0.66 +1.4
Or see this region's nucleotide sequence