Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1390 and Shewana3_1391 are separated by 72 nucleotides Shewana3_1391 and Shewana3_1392 overlap by 14 nucleotides Shewana3_1392 and Shewana3_1393 are separated by 24 nucleotides
Shewana3_1390: Shewana3_1390 - GAF sensor signal transduction histidine kinase (RefSeq), at 1,604,737 to 1,606,098
_1390
Shewana3_1391: Shewana3_1391 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 1,606,171 to 1,607,109
_1391
Shewana3_1392: Shewana3_1392 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 1,607,096 to 1,607,632
_1392
Shewana3_1393: Shewana3_1393 - protein of unknown function DUF940, membrane lipoprotein putative (RefSeq), at 1,607,657 to 1,610,032
_1393
Position (kb) 1607
1608 Strain fitness (log2 ratio) -1
0
1 at 1606.466 kb on + strand, within Shewana3_1391 at 1606.615 kb on + strand, within Shewana3_1391 at 1606.765 kb on - strand, within Shewana3_1391 at 1606.970 kb on + strand, within Shewana3_1391 at 1606.970 kb on + strand, within Shewana3_1391 at 1608.131 kb on - strand, within Shewana3_1393 at 1608.205 kb on + strand, within Shewana3_1393
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,606,466 + Shewana3_1391 0.31 +0.7 1,606,615 + Shewana3_1391 0.47 +0.3 1,606,765 - Shewana3_1391 0.63 -0.3 1,606,970 + Shewana3_1391 0.85 -0.1 1,606,970 + Shewana3_1391 0.85 -0.6 1,608,131 - Shewana3_1393 0.20 -1.7 1,608,205 + Shewana3_1393 0.23 +0.1
Or see this region's nucleotide sequence