Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0689 and Shewana3_0690 are separated by 125 nucleotides Shewana3_0690 and Shewana3_0691 are separated by 402 nucleotides
Shewana3_0689: Shewana3_0689 - DegS serine peptidase (RefSeq), at 804,742 to 805,824
_0689
Shewana3_0690: Shewana3_0690 - peptidase Do (RefSeq), at 805,950 to 807,302
_0690
Shewana3_0691: Shewana3_0691 - AFG1 family ATPase (RefSeq), at 807,705 to 808,871
_0691
Position (kb) 805
806
807
808 Strain fitness (log2 ratio) -2
-1
0
1 at 804.995 kb on - strand, within Shewana3_0689 at 805.051 kb on + strand, within Shewana3_0689 at 805.085 kb on - strand, within Shewana3_0689 at 805.897 kb on + strand at 806.030 kb on - strand at 806.113 kb on + strand at 806.121 kb on - strand, within Shewana3_0690 at 806.521 kb on - strand, within Shewana3_0690 at 806.753 kb on + strand, within Shewana3_0690 at 806.999 kb on - strand, within Shewana3_0690 at 807.514 kb on - strand at 807.580 kb on + strand at 807.588 kb on - strand at 807.739 kb on + strand at 807.766 kb on + strand at 807.841 kb on - strand, within Shewana3_0691 at 807.900 kb on + strand, within Shewana3_0691 at 807.976 kb on + strand, within Shewana3_0691 at 808.102 kb on - strand, within Shewana3_0691 at 808.102 kb on - strand, within Shewana3_0691
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 804,995 - Shewana3_0689 0.23 +0.5 805,051 + Shewana3_0689 0.29 -1.2 805,085 - Shewana3_0689 0.32 -1.2 805,897 + -2.0 806,030 - +0.3 806,113 + -0.0 806,121 - Shewana3_0690 0.13 -1.0 806,521 - Shewana3_0690 0.42 -0.0 806,753 + Shewana3_0690 0.59 -1.0 806,999 - Shewana3_0690 0.78 -0.0 807,514 - -0.1 807,580 + -0.3 807,588 - +0.1 807,739 + +0.3 807,766 + -1.2 807,841 - Shewana3_0691 0.12 -1.5 807,900 + Shewana3_0691 0.17 +0.2 807,976 + Shewana3_0691 0.23 -0.8 808,102 - Shewana3_0691 0.34 -0.1 808,102 - Shewana3_0691 0.34 -1.2
Or see this region's nucleotide sequence