Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0607 and Shewana3_0608 are separated by 199 nucleotides Shewana3_0608 and Shewana3_0609 are separated by 55 nucleotides
Shewana3_0607: Shewana3_0607 - peptidase S9 prolyl oligopeptidase (RefSeq), at 709,775 to 712,255
_0607
Shewana3_0608: Shewana3_0608 - putative signal transduction protein (RefSeq), at 712,455 to 713,600
_0608
Shewana3_0609: Shewana3_0609 - alpha/beta hydrolase domain-containing protein (RefSeq), at 713,656 to 714,567
_0609
Position (kb) 712
713
714 Strain fitness (log2 ratio) -1
0
1
2 at 711.458 kb on - strand, within Shewana3_0607 at 711.687 kb on - strand, within Shewana3_0607 at 711.708 kb on - strand, within Shewana3_0607 at 711.719 kb on + strand, within Shewana3_0607 at 711.792 kb on + strand, within Shewana3_0607 at 711.959 kb on + strand, within Shewana3_0607 at 712.335 kb on + strand at 712.343 kb on - strand at 712.541 kb on + strand at 712.797 kb on - strand, within Shewana3_0608 at 712.838 kb on - strand, within Shewana3_0608 at 713.116 kb on - strand, within Shewana3_0608 at 713.124 kb on + strand, within Shewana3_0608 at 713.379 kb on - strand, within Shewana3_0608 at 713.431 kb on - strand, within Shewana3_0608 at 713.458 kb on - strand, within Shewana3_0608 at 713.561 kb on + strand at 713.594 kb on + strand at 713.842 kb on - strand, within Shewana3_0609 at 714.194 kb on - strand, within Shewana3_0609 at 714.287 kb on + strand, within Shewana3_0609
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 711,458 - Shewana3_0607 0.68 -0.9 711,687 - Shewana3_0607 0.77 +0.3 711,708 - Shewana3_0607 0.78 +0.8 711,719 + Shewana3_0607 0.78 +0.2 711,792 + Shewana3_0607 0.81 +0.4 711,959 + Shewana3_0607 0.88 +0.5 712,335 + -0.9 712,343 - +0.6 712,541 + +0.3 712,797 - Shewana3_0608 0.30 +0.3 712,838 - Shewana3_0608 0.33 +0.1 713,116 - Shewana3_0608 0.58 +0.2 713,124 + Shewana3_0608 0.58 -0.7 713,379 - Shewana3_0608 0.81 +1.2 713,431 - Shewana3_0608 0.85 -0.7 713,458 - Shewana3_0608 0.88 +0.6 713,561 + +2.0 713,594 + +1.0 713,842 - Shewana3_0609 0.20 -1.0 714,194 - Shewana3_0609 0.59 -0.7 714,287 + Shewana3_0609 0.69 +0.8
Or see this region's nucleotide sequence