Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0268 and Shewana3_0269 are separated by 304 nucleotides Shewana3_0269 and Shewana3_0270 are separated by 117 nucleotides Shewana3_0270 and Shewana3_0271 are separated by 36 nucleotides
Shewana3_0268: Shewana3_0268 - site-specific DNA-methyltransferase (adenine-specific) (RefSeq), at 301,666 to 302,505
_0268
Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267
_0269
Shewana3_0270: Shewana3_0270 - MOSC domain-containing protein (RefSeq), at 304,385 to 305,080
_0270
Shewana3_0271: Shewana3_0271 - hypothetical protein (RefSeq), at 305,117 to 305,473
_0271
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1 at 301.819 kb on + strand, within Shewana3_0268 at 301.855 kb on + strand, within Shewana3_0268 at 301.892 kb on - strand, within Shewana3_0268 at 301.897 kb on + strand, within Shewana3_0268 at 301.915 kb on + strand, within Shewana3_0268 at 301.923 kb on - strand, within Shewana3_0268 at 301.940 kb on + strand, within Shewana3_0268 at 301.953 kb on - strand, within Shewana3_0268 at 302.047 kb on - strand, within Shewana3_0268 at 302.141 kb on - strand, within Shewana3_0268 at 302.182 kb on + strand, within Shewana3_0268 at 302.291 kb on + strand, within Shewana3_0268 at 302.299 kb on + strand, within Shewana3_0268 at 302.324 kb on + strand, within Shewana3_0268 at 302.353 kb on + strand, within Shewana3_0268 at 302.415 kb on - strand, within Shewana3_0268 at 302.856 kb on + strand at 302.864 kb on - strand at 302.912 kb on + strand at 302.912 kb on + strand at 303.238 kb on + strand, within Shewana3_0269 at 303.257 kb on - strand, within Shewana3_0269 at 303.318 kb on + strand, within Shewana3_0269 at 303.371 kb on - strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.385 kb on + strand, within Shewana3_0269 at 303.393 kb on - strand, within Shewana3_0269 at 303.505 kb on - strand, within Shewana3_0269 at 303.535 kb on + strand, within Shewana3_0269 at 303.554 kb on - strand, within Shewana3_0269 at 303.565 kb on - strand, within Shewana3_0269 at 303.668 kb on - strand, within Shewana3_0269 at 303.695 kb on + strand, within Shewana3_0269 at 303.722 kb on - strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.765 kb on + strand, within Shewana3_0269 at 303.773 kb on - strand, within Shewana3_0269 at 303.929 kb on + strand, within Shewana3_0269 at 303.938 kb on - strand, within Shewana3_0269 at 303.969 kb on + strand, within Shewana3_0269 at 304.149 kb on + strand at 304.149 kb on + strand at 304.157 kb on - strand at 304.272 kb on - strand at 304.352 kb on + strand at 304.536 kb on + strand, within Shewana3_0270 at 304.603 kb on - strand, within Shewana3_0270 at 304.795 kb on - strand, within Shewana3_0270 at 304.804 kb on + strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 304.880 kb on - strand, within Shewana3_0270 at 305.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 301,819 + Shewana3_0268 0.18 +0.1 301,855 + Shewana3_0268 0.23 -0.5 301,892 - Shewana3_0268 0.27 -1.9 301,897 + Shewana3_0268 0.28 +0.0 301,915 + Shewana3_0268 0.30 -0.2 301,923 - Shewana3_0268 0.31 -0.3 301,940 + Shewana3_0268 0.33 +0.7 301,953 - Shewana3_0268 0.34 +0.1 302,047 - Shewana3_0268 0.45 -0.4 302,141 - Shewana3_0268 0.57 +0.3 302,182 + Shewana3_0268 0.61 +0.2 302,291 + Shewana3_0268 0.74 -0.1 302,299 + Shewana3_0268 0.75 +0.9 302,324 + Shewana3_0268 0.78 -0.4 302,353 + Shewana3_0268 0.82 +0.1 302,415 - Shewana3_0268 0.89 -0.7 302,856 + +0.3 302,864 - +0.6 302,912 + -0.6 302,912 + +0.1 303,238 + Shewana3_0269 0.29 +0.6 303,257 - Shewana3_0269 0.31 +0.2 303,318 + Shewana3_0269 0.35 +0.5 303,371 - Shewana3_0269 0.38 +0.4 303,385 + Shewana3_0269 0.39 +0.4 303,385 + Shewana3_0269 0.39 -0.5 303,393 - Shewana3_0269 0.40 -0.5 303,505 - Shewana3_0269 0.48 +0.0 303,535 + Shewana3_0269 0.50 +0.6 303,554 - Shewana3_0269 0.51 +0.3 303,565 - Shewana3_0269 0.52 +0.2 303,668 - Shewana3_0269 0.59 -0.4 303,695 + Shewana3_0269 0.61 +0.2 303,722 - Shewana3_0269 0.63 +0.2 303,765 + Shewana3_0269 0.66 +0.6 303,765 + Shewana3_0269 0.66 -0.2 303,773 - Shewana3_0269 0.66 -1.4 303,929 + Shewana3_0269 0.77 -0.3 303,938 - Shewana3_0269 0.77 +0.3 303,969 + Shewana3_0269 0.79 +0.4 304,149 + +1.6 304,149 + +0.6 304,157 - -1.7 304,272 - +0.6 304,352 + +0.4 304,536 + Shewana3_0270 0.22 -0.0 304,603 - Shewana3_0270 0.31 +0.2 304,795 - Shewana3_0270 0.59 -0.3 304,804 + Shewana3_0270 0.60 +0.5 304,880 - Shewana3_0270 0.71 +0.5 304,880 - Shewana3_0270 0.71 +0.7 305,104 - +0.3
Or see this region's nucleotide sequence