Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4268 and Shewana3_4269 are separated by 8 nucleotides Shewana3_4269 and Shewana3_4270 are separated by 98 nucleotides Shewana3_4270 and Shewana3_4271 overlap by 4 nucleotides
Shewana3_4268: Shewana3_4268 - hypothetical protein (RefSeq), at 146,057 to 147,124
_4268
Shewana3_4269: Shewana3_4269 - hypothetical protein (RefSeq), at 147,133 to 147,420
_4269
Shewana3_4270: Shewana3_4270 - hypothetical protein (RefSeq), at 147,519 to 148,514
_4270
Shewana3_4271: Shewana3_4271 - hypothetical protein (RefSeq), at 148,511 to 149,905
_4271
Position (kb) 147
148
149 Strain fitness (log2 ratio) -1
0
1
2 at 146.572 kb on - strand, within Shewana3_4268 at 146.615 kb on + strand, within Shewana3_4268 at 146.669 kb on - strand, within Shewana3_4268 at 146.780 kb on + strand, within Shewana3_4268 at 146.780 kb on + strand, within Shewana3_4268 at 146.928 kb on + strand, within Shewana3_4268 at 147.126 kb on - strand at 147.133 kb on - strand at 147.611 kb on + strand at 147.714 kb on - strand, within Shewana3_4270 at 147.811 kb on - strand, within Shewana3_4270 at 147.811 kb on - strand, within Shewana3_4270 at 147.930 kb on + strand, within Shewana3_4270 at 147.930 kb on + strand, within Shewana3_4270 at 148.391 kb on + strand, within Shewana3_4270 at 148.391 kb on + strand, within Shewana3_4270 at 148.399 kb on - strand, within Shewana3_4270 at 148.399 kb on - strand, within Shewana3_4270 at 148.597 kb on - strand at 148.616 kb on - strand at 148.785 kb on + strand, within Shewana3_4271 at 148.981 kb on + strand, within Shewana3_4271 at 149.184 kb on + strand, within Shewana3_4271 at 149.185 kb on - strand, within Shewana3_4271 at 149.230 kb on - strand, within Shewana3_4271 at 149.262 kb on - strand, within Shewana3_4271 at 149.269 kb on + strand, within Shewana3_4271 at 149.390 kb on - strand, within Shewana3_4271 at 149.390 kb on - strand, within Shewana3_4271 at 149.428 kb on + strand, within Shewana3_4271 at 149.458 kb on - strand, within Shewana3_4271
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 146,572 - Shewana3_4268 0.48 +0.5 146,615 + Shewana3_4268 0.52 +0.0 146,669 - Shewana3_4268 0.57 -0.2 146,780 + Shewana3_4268 0.68 -0.5 146,780 + Shewana3_4268 0.68 -0.8 146,928 + Shewana3_4268 0.82 +0.4 147,126 - -0.4 147,133 - -0.7 147,611 + -0.1 147,714 - Shewana3_4270 0.20 -0.5 147,811 - Shewana3_4270 0.29 -0.4 147,811 - Shewana3_4270 0.29 +0.6 147,930 + Shewana3_4270 0.41 +2.1 147,930 + Shewana3_4270 0.41 -0.2 148,391 + Shewana3_4270 0.88 +0.4 148,391 + Shewana3_4270 0.88 +1.8 148,399 - Shewana3_4270 0.88 +0.8 148,399 - Shewana3_4270 0.88 +0.1 148,597 - -0.4 148,616 - +0.4 148,785 + Shewana3_4271 0.20 +0.4 148,981 + Shewana3_4271 0.34 +0.1 149,184 + Shewana3_4271 0.48 -0.7 149,185 - Shewana3_4271 0.48 -0.1 149,230 - Shewana3_4271 0.52 +1.0 149,262 - Shewana3_4271 0.54 -0.1 149,269 + Shewana3_4271 0.54 +0.4 149,390 - Shewana3_4271 0.63 +1.0 149,390 - Shewana3_4271 0.63 -0.6 149,428 + Shewana3_4271 0.66 -0.5 149,458 - Shewana3_4271 0.68 -0.3
Or see this region's nucleotide sequence