Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3473 and Shew_3474 are separated by 69 nucleotides Shew_3474 and Shew_3475 are separated by 238 nucleotides Shew_3475 and Shew_3476 are separated by 156 nucleotides
Shew_3473: Shew_3473 - response regulator receiver protein (RefSeq), at 4,158,437 to 4,160,185
_3473
Shew_3474: Shew_3474 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,160,255 to 4,162,087
_3474
Shew_3475: Shew_3475 - hypothetical protein (RefSeq), at 4,162,326 to 4,162,790
_3475
Shew_3476: Shew_3476 - transporter DMT superfamily protein (RefSeq), at 4,162,947 to 4,163,834
_3476
Position (kb)
4160
4161
4162
4163 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4159.442 kb on - strand, within Shew_3473 at 4159.476 kb on - strand, within Shew_3473 at 4159.519 kb on - strand, within Shew_3473 at 4159.651 kb on + strand, within Shew_3473 at 4159.770 kb on - strand, within Shew_3473 at 4159.817 kb on - strand, within Shew_3473 at 4159.999 kb on - strand, within Shew_3473 at 4160.455 kb on + strand, within Shew_3474 at 4160.529 kb on - strand, within Shew_3474 at 4160.579 kb on - strand, within Shew_3474 at 4160.583 kb on + strand, within Shew_3474 at 4160.616 kb on + strand, within Shew_3474 at 4160.673 kb on + strand, within Shew_3474 at 4160.793 kb on + strand, within Shew_3474 at 4160.866 kb on + strand, within Shew_3474 at 4160.866 kb on + strand, within Shew_3474 at 4160.874 kb on - strand, within Shew_3474 at 4161.971 kb on - strand at 4161.994 kb on - strand at 4161.994 kb on - strand at 4162.141 kb on + strand at 4162.307 kb on - strand at 4162.312 kb on - strand at 4162.353 kb on - strand at 4162.632 kb on - strand, within Shew_3475 at 4162.848 kb on + strand at 4162.856 kb on - strand at 4162.921 kb on + strand at 4163.023 kb on + strand at 4163.084 kb on - strand, within Shew_3476
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,159,442 - Shew_3473 0.57 +1.4 4,159,476 - Shew_3473 0.59 +3.0 4,159,519 - Shew_3473 0.62 +1.1 4,159,651 + Shew_3473 0.69 +1.4 4,159,770 - Shew_3473 0.76 +1.7 4,159,817 - Shew_3473 0.79 +0.7 4,159,999 - Shew_3473 0.89 +1.3 4,160,455 + Shew_3474 0.11 +0.4 4,160,529 - Shew_3474 0.15 +0.2 4,160,579 - Shew_3474 0.18 -4.7 4,160,583 + Shew_3474 0.18 +0.3 4,160,616 + Shew_3474 0.20 -0.5 4,160,673 + Shew_3474 0.23 -0.6 4,160,793 + Shew_3474 0.29 -0.8 4,160,866 + Shew_3474 0.33 -0.2 4,160,866 + Shew_3474 0.33 -0.4 4,160,874 - Shew_3474 0.34 -2.6 4,161,971 - -1.6 4,161,994 - +0.3 4,161,994 - -0.1 4,162,141 + -0.8 4,162,307 - -0.3 4,162,312 - -0.6 4,162,353 - -0.8 4,162,632 - Shew_3475 0.66 -0.0 4,162,848 + -0.1 4,162,856 - +0.8 4,162,921 + +0.5 4,163,023 + -0.7 4,163,084 - Shew_3476 0.15 -0.1
Or see this region's nucleotide sequence