Strain Fitness in Shewanella loihica PV-4 around Shew_2213

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2212 and Shew_2213 are separated by 116 nucleotidesShew_2213 and Shew_2214 are separated by 120 nucleotidesShew_2214 and pheT are separated by 4 nucleotides Shew_2212: Shew_2212 - peptidyl-dipeptidase Dcp (RefSeq), at 2,579,958 to 2,582,120 _2212 Shew_2213: Shew_2213 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (RefSeq), at 2,582,237 to 2,583,172 _2213 Shew_2214: Shew_2214 - integration host factor, alpha subunit (RefSeq), at 2,583,293 to 2,583,589 _2214 Shew_2215: pheT - phenylalanyl-tRNA synthetase subunit beta (RefSeq), at 2,583,594 to 2,585,981 pheT Position (kb) 2582 2583 2584Strain fitness (log2 ratio) -3 -2 -1 0 1at 2581.479 kb on - strand, within Shew_2212at 2581.500 kb on + strand, within Shew_2212at 2582.336 kb on + strand, within Shew_2213at 2582.392 kb on + strand, within Shew_2213at 2582.702 kb on - strand, within Shew_2213at 2583.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,581,479 - Shew_2212 0.70 -0.7
2,581,500 + Shew_2212 0.71 +0.2
2,582,336 + Shew_2213 0.11 -3.1
2,582,392 + Shew_2213 0.17 -2.3
2,582,702 - Shew_2213 0.50 -3.1
2,583,221 - -1.7

Or see this region's nucleotide sequence