Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1708 and Shew_1709 are separated by 130 nucleotides Shew_1709 and Shew_1710 are separated by 10 nucleotides Shew_1710 and Shew_1711 are separated by 161 nucleotides Shew_1711 and Shew_1712 are separated by 151 nucleotides
Shew_1708: Shew_1708 - hypothetical protein (RefSeq), at 1,961,524 to 1,962,102
_1708
Shew_1709: Shew_1709 - hypothetical protein (RefSeq), at 1,962,233 to 1,962,598
_1709
Shew_1710: Shew_1710 - hypothetical protein (RefSeq), at 1,962,609 to 1,962,854
_1710
Shew_1711: Shew_1711 - methyl-accepting chemotaxis protein (RefSeq), at 1,963,016 to 1,964,173
_1711
Shew_1712: Shew_1712 - hypothetical protein (RefSeq), at 1,964,325 to 1,965,611
_1712
Position (kb) 1963
1964
1965 Strain fitness (log2 ratio) -2
-1
0
1 at 1962.096 kb on + strand at 1962.460 kb on + strand, within Shew_1709 at 1962.799 kb on + strand, within Shew_1710 at 1962.952 kb on - strand at 1963.104 kb on + strand at 1964.050 kb on + strand, within Shew_1711 at 1964.475 kb on + strand, within Shew_1712 at 1964.659 kb on + strand, within Shew_1712 at 1964.770 kb on + strand, within Shew_1712
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,962,096 + -0.5 1,962,460 + Shew_1709 0.62 -2.7 1,962,799 + Shew_1710 0.77 -0.5 1,962,952 - +0.3 1,963,104 + +1.5 1,964,050 + Shew_1711 0.89 -0.7 1,964,475 + Shew_1712 0.12 -1.4 1,964,659 + Shew_1712 0.26 -0.4 1,964,770 + Shew_1712 0.35 -0.5
Or see this region's nucleotide sequence