Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0763 and Shew_0764 are separated by 186 nucleotides Shew_0764 and Shew_0765 are separated by 138 nucleotides
Shew_0763: Shew_0763 - putative PAS/PAC sensor protein (RefSeq), at 867,403 to 869,619
_0763
Shew_0764: Shew_0764 - radical SAM domain-containing protein (RefSeq), at 869,806 to 870,408
_0764
Shew_0765: Shew_0765 - acriflavin resistance protein (RefSeq), at 870,547 to 873,696
_0765
Position (kb) 869
870
871 Strain fitness (log2 ratio) -1
0
1
2 at 868.989 kb on - strand, within Shew_0763 at 869.055 kb on + strand, within Shew_0763 at 869.135 kb on + strand, within Shew_0763 at 869.301 kb on + strand, within Shew_0763 at 869.388 kb on + strand, within Shew_0763 at 869.450 kb on - strand at 870.182 kb on - strand, within Shew_0764 at 870.222 kb on + strand, within Shew_0764 at 870.335 kb on - strand, within Shew_0764 at 870.396 kb on - strand at 870.402 kb on + strand at 870.545 kb on + strand at 870.665 kb on - strand at 870.665 kb on - strand at 870.944 kb on + strand, within Shew_0765 at 871.092 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.313 kb on - strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.385 kb on + strand, within Shew_0765
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 868,989 - Shew_0763 0.72 +0.5 869,055 + Shew_0763 0.75 +1.2 869,135 + Shew_0763 0.78 +0.8 869,301 + Shew_0763 0.86 +2.2 869,388 + Shew_0763 0.90 -1.4 869,450 - +1.6 870,182 - Shew_0764 0.62 +0.5 870,222 + Shew_0764 0.69 +0.1 870,335 - Shew_0764 0.88 +2.1 870,396 - -0.3 870,402 + +0.4 870,545 + -0.5 870,665 - -0.0 870,665 - -0.7 870,944 + Shew_0765 0.13 -0.2 871,092 + Shew_0765 0.17 -0.2 871,305 + Shew_0765 0.24 -0.5 871,305 + Shew_0765 0.24 -1.4 871,305 + Shew_0765 0.24 -1.2 871,313 - Shew_0765 0.24 -0.2 871,342 + Shew_0765 0.25 -0.5 871,342 + Shew_0765 0.25 -0.3 871,342 + Shew_0765 0.25 -0.3 871,385 + Shew_0765 0.27 -0.5
Or see this region's nucleotide sequence