Strain Fitness in Shewanella loihica PV-4 around Shew_0746

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0743 and Shew_0744 are separated by 103 nucleotidesShew_0744 and Shew_0745 are separated by 183 nucleotidesShew_0745 and Shew_0746 are separated by 25 nucleotidesShew_0746 and Shew_0747 are separated by 206 nucleotides Shew_0743: Shew_0743 - sodium:dicarboxylate symporter (RefSeq), at 844,566 to 845,867 _0743 Shew_0744: Shew_0744 - protein of unknown function DUF306, Meta and HslJ (RefSeq), at 845,971 to 846,384 _0744 Shew_0745: Shew_0745 - hypothetical protein (RefSeq), at 846,568 to 846,807 _0745 Shew_0746: Shew_0746 - diguanylate cyclase (RefSeq), at 846,833 to 847,777 _0746 Shew_0747: Shew_0747 - GGDEF domain-containing protein (RefSeq), at 847,984 to 848,940 _0747 Position (kb) 846 847 848Strain fitness (log2 ratio) -2 -1 0 1at 846.029 kb on + strand, within Shew_0744at 846.254 kb on + strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.262 kb on - strand, within Shew_0744at 846.540 kb on + strandat 846.831 kb on + strandat 846.831 kb on + strandat 846.831 kb on + strandat 846.939 kb on - strand, within Shew_0746at 846.949 kb on - strand, within Shew_0746at 847.065 kb on - strand, within Shew_0746at 847.553 kb on - strand, within Shew_0746at 847.555 kb on + strand, within Shew_0746at 847.618 kb on - strand, within Shew_0746at 848.310 kb on + strand, within Shew_0747at 848.465 kb on - strand, within Shew_0747at 848.569 kb on + strand, within Shew_0747at 848.577 kb on - strand, within Shew_0747at 848.681 kb on + strand, within Shew_0747at 848.731 kb on + strand, within Shew_0747

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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846,029 + Shew_0744 0.14 -0.2
846,254 + Shew_0744 0.68 +0.1
846,262 - Shew_0744 0.70 +1.0
846,262 - Shew_0744 0.70 +0.8
846,262 - Shew_0744 0.70 -2.2
846,262 - Shew_0744 0.70 +0.2
846,540 + +1.4
846,831 + -0.2
846,831 + +0.3
846,831 + +0.4
846,939 - Shew_0746 0.11 +0.4
846,949 - Shew_0746 0.12 -0.8
847,065 - Shew_0746 0.25 -1.5
847,553 - Shew_0746 0.76 +0.2
847,555 + Shew_0746 0.76 -0.0
847,618 - Shew_0746 0.83 +0.2
848,310 + Shew_0747 0.34 +0.3
848,465 - Shew_0747 0.50 -0.4
848,569 + Shew_0747 0.61 +0.3
848,577 - Shew_0747 0.62 +0.6
848,681 + Shew_0747 0.73 +0.0
848,731 + Shew_0747 0.78 -0.2

Or see this region's nucleotide sequence