Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0360 and Shew_0361 are separated by 167 nucleotides Shew_0361 and Shew_0362 are separated by 28 nucleotides Shew_0362 and Shew_0363 are separated by 117 nucleotides Shew_0363 and Shew_0364 are separated by 11 nucleotides
Shew_0360: Shew_0360 - UbiD family decarboxylase (RefSeq), at 408,711 to 410,192
_0360
Shew_0361: Shew_0361 - hypothetical protein (RefSeq), at 410,360 to 410,836
_0361
Shew_0362: Shew_0362 - signal peptidase I (RefSeq), at 410,865 to 411,581
_0362
Shew_0363: Shew_0363 - nucleotidase (RefSeq), at 411,699 to 412,376
_0363
Shew_0364: Shew_0364 - MshA, mannose-sensitive haemaglutinin (RefSeq), at 412,388 to 412,879
_0364
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 410.378 kb on + strand at 410.436 kb on - strand, within Shew_0361 at 410.658 kb on + strand, within Shew_0361 at 410.659 kb on + strand, within Shew_0361 at 410.666 kb on - strand, within Shew_0361 at 410.756 kb on - strand, within Shew_0361 at 410.766 kb on - strand, within Shew_0361 at 410.791 kb on - strand at 411.424 kb on - strand, within Shew_0362 at 411.654 kb on + strand at 411.678 kb on + strand at 411.680 kb on - strand at 412.255 kb on - strand, within Shew_0363 at 412.434 kb on - strand at 412.434 kb on - strand at 412.441 kb on - strand, within Shew_0364
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 410,378 + +1.8 410,436 - Shew_0361 0.16 +0.3 410,658 + Shew_0361 0.62 +0.0 410,659 + Shew_0361 0.63 +0.3 410,666 - Shew_0361 0.64 +0.3 410,756 - Shew_0361 0.83 -1.9 410,766 - Shew_0361 0.85 -1.1 410,791 - -0.6 411,424 - Shew_0362 0.78 -0.1 411,654 + +0.6 411,678 + -0.9 411,680 - -0.3 412,255 - Shew_0363 0.82 -0.0 412,434 - -0.1 412,434 - -0.1 412,441 - Shew_0364 0.11 -2.0
Or see this region's nucleotide sequence