Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0240 and Shew_0241 overlap by 1 nucleotides Shew_0241 and Shew_0242 are separated by 10 nucleotides Shew_0242 and Shew_0243 are separated by 189 nucleotides
Shew_0240: Shew_0240 - cytoplasmic chaperone TorD family protein (RefSeq), at 256,691 to 257,305
_0240
Shew_0241: Shew_0241 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 257,305 to 257,850
_0241
Shew_0242: Shew_0242 - molydopterin dinucleotide-binding region (RefSeq), at 257,861 to 260,074
_0242
Shew_0243: Shew_0243 - LysR family transcriptional regulator (RefSeq), at 260,264 to 261,229
_0243
Position (kb) 257
258
259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 257.060 kb on + strand, within Shew_0240 at 257.281 kb on + strand at 257.567 kb on - strand, within Shew_0241 at 257.567 kb on - strand, within Shew_0241 at 257.584 kb on + strand, within Shew_0241 at 257.806 kb on + strand at 257.814 kb on - strand at 258.004 kb on + strand at 258.012 kb on - strand at 258.070 kb on + strand at 258.070 kb on + strand at 258.362 kb on - strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.411 kb on - strand, within Shew_0242 at 258.424 kb on - strand, within Shew_0242 at 258.484 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.602 kb on + strand, within Shew_0242 at 259.080 kb on - strand, within Shew_0242 at 259.089 kb on - strand, within Shew_0242 at 259.089 kb on - strand, within Shew_0242 at 259.235 kb on + strand, within Shew_0242 at 259.568 kb on - strand, within Shew_0242 at 259.630 kb on + strand, within Shew_0242 at 259.738 kb on - strand, within Shew_0242 at 259.994 kb on + strand at 260.215 kb on + strand at 260.335 kb on - strand at 260.545 kb on + strand, within Shew_0243 at 260.591 kb on + strand, within Shew_0243 at 260.642 kb on + strand, within Shew_0243 at 260.710 kb on - strand, within Shew_0243 at 260.765 kb on - strand, within Shew_0243 at 260.893 kb on + strand, within Shew_0243 at 260.953 kb on + strand, within Shew_0243 at 260.962 kb on - strand, within Shew_0243 at 260.998 kb on + strand, within Shew_0243 at 261.022 kb on + strand, within Shew_0243 at 261.038 kb on - strand, within Shew_0243 at 261.057 kb on - strand, within Shew_0243
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 257,060 + Shew_0240 0.60 -0.8 257,281 + -0.8 257,567 - Shew_0241 0.48 -1.8 257,567 - Shew_0241 0.48 -0.1 257,584 + Shew_0241 0.51 -0.8 257,806 + +0.1 257,814 - +0.1 258,004 + +0.4 258,012 - +0.3 258,070 + -0.2 258,070 + +0.2 258,362 - Shew_0242 0.23 +0.6 258,403 + Shew_0242 0.24 +0.2 258,403 + Shew_0242 0.24 +0.3 258,411 - Shew_0242 0.25 +0.5 258,424 - Shew_0242 0.25 +0.6 258,484 - Shew_0242 0.28 +0.7 258,493 - Shew_0242 0.29 +0.3 258,493 - Shew_0242 0.29 +0.4 258,602 + Shew_0242 0.33 +0.2 259,080 - Shew_0242 0.55 -0.8 259,089 - Shew_0242 0.55 -1.0 259,089 - Shew_0242 0.55 +0.2 259,235 + Shew_0242 0.62 +0.6 259,568 - Shew_0242 0.77 -2.2 259,630 + Shew_0242 0.80 +4.4 259,738 - Shew_0242 0.85 +1.6 259,994 + +0.2 260,215 + +0.1 260,335 - +0.6 260,545 + Shew_0243 0.29 +0.6 260,591 + Shew_0243 0.34 +0.9 260,642 + Shew_0243 0.39 +1.0 260,710 - Shew_0243 0.46 -1.0 260,765 - Shew_0243 0.52 -0.1 260,893 + Shew_0243 0.65 -0.3 260,953 + Shew_0243 0.71 +0.5 260,962 - Shew_0243 0.72 -0.6 260,998 + Shew_0243 0.76 -0.2 261,022 + Shew_0243 0.78 +0.4 261,038 - Shew_0243 0.80 -0.5 261,057 - Shew_0243 0.82 +0.6
Or see this region's nucleotide sequence