Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0528 and BT0529 are separated by 30 nucleotides BT0529 and BT0530 are separated by 78 nucleotides BT0530 and BT0531 are separated by 4 nucleotides BT0531 and BT0532 are separated by 68 nucleotides
BT0528: BT0528 - phosphoribosylanthranilate isomerase (EC 5.3.1.24) <small>(from data)</small>, at 651,798 to 652,421
BT0528
BT0529: BT0529 - indole-3-glycerol phosphate synthase (NCBI ptt file), at 652,452 to 653,234
BT0529
BT0530: BT0530 - anthranilate phosphoribosyltransferase (EC 2.4.2.18) <small>(from data)</small>, at 653,313 to 654,311
BT0530
BT0531: BT0531 - anthranilate synthase component II (NCBI ptt file), at 654,316 to 654,882
BT0531
BT0532: BT0532 - anthranilate synthase component I (NCBI ptt file), at 654,951 to 656,357
BT0532
Position (kb) 653
654
655 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 652.350 kb on + strand, within BT0528 at 652.351 kb on - strand, within BT0528 at 652.395 kb on + strand at 652.448 kb on - strand at 652.449 kb on + strand at 652.453 kb on + strand at 652.454 kb on - strand at 652.645 kb on - strand, within BT0529 at 652.709 kb on + strand, within BT0529 at 652.710 kb on - strand, within BT0529 at 652.710 kb on - strand, within BT0529 at 652.717 kb on - strand, within BT0529 at 652.857 kb on + strand, within BT0529 at 652.865 kb on - strand, within BT0529 at 652.890 kb on + strand, within BT0529 at 653.000 kb on - strand, within BT0529 at 653.000 kb on - strand, within BT0529 at 653.078 kb on + strand, within BT0529 at 653.114 kb on + strand, within BT0529 at 653.142 kb on - strand at 653.169 kb on - strand at 653.205 kb on - strand at 653.224 kb on - strand at 653.304 kb on + strand at 653.305 kb on - strand at 653.307 kb on + strand at 653.312 kb on - strand at 653.424 kb on + strand, within BT0530 at 653.451 kb on - strand, within BT0530 at 653.498 kb on + strand, within BT0530 at 653.609 kb on + strand, within BT0530 at 653.699 kb on + strand, within BT0530 at 653.700 kb on - strand, within BT0530 at 653.701 kb on + strand, within BT0530 at 653.701 kb on + strand, within BT0530 at 653.706 kb on - strand, within BT0530 at 653.729 kb on + strand, within BT0530 at 653.730 kb on - strand, within BT0530 at 653.731 kb on + strand, within BT0530 at 653.732 kb on - strand, within BT0530 at 653.879 kb on + strand, within BT0530 at 653.973 kb on - strand, within BT0530 at 653.995 kb on - strand, within BT0530 at 654.154 kb on - strand, within BT0530 at 654.191 kb on + strand, within BT0530 at 654.248 kb on + strand at 654.250 kb on + strand at 654.251 kb on + strand at 654.275 kb on - strand at 654.293 kb on + strand at 654.296 kb on - strand at 654.416 kb on - strand, within BT0531 at 654.451 kb on + strand, within BT0531 at 654.541 kb on + strand, within BT0531 at 654.575 kb on - strand, within BT0531 at 654.688 kb on - strand, within BT0531 at 654.739 kb on + strand, within BT0531 at 654.999 kb on + strand at 655.000 kb on - strand at 655.011 kb on + strand at 655.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 652,350 + BT0528 0.88 -3.8 652,351 - BT0528 0.89 -5.2 652,395 + -4.3 652,448 - +1.1 652,449 + -1.9 652,453 + -2.7 652,454 - +0.3 652,645 - BT0529 0.25 -2.8 652,709 + BT0529 0.33 -1.4 652,710 - BT0529 0.33 -3.2 652,710 - BT0529 0.33 -2.4 652,717 - BT0529 0.34 -2.9 652,857 + BT0529 0.52 -2.7 652,865 - BT0529 0.53 -2.4 652,890 + BT0529 0.56 -2.7 653,000 - BT0529 0.70 -2.4 653,000 - BT0529 0.70 -0.9 653,078 + BT0529 0.80 -1.9 653,114 + BT0529 0.85 -0.9 653,142 - +0.6 653,169 - -1.7 653,205 - -3.9 653,224 - -3.2 653,304 + -1.9 653,305 - -2.8 653,307 + -3.1 653,312 - -1.7 653,424 + BT0530 0.11 -3.5 653,451 - BT0530 0.14 -3.4 653,498 + BT0530 0.19 -3.1 653,609 + BT0530 0.30 -2.7 653,699 + BT0530 0.39 -3.1 653,700 - BT0530 0.39 -2.2 653,701 + BT0530 0.39 -2.9 653,701 + BT0530 0.39 -2.4 653,706 - BT0530 0.39 -3.3 653,729 + BT0530 0.42 -2.4 653,730 - BT0530 0.42 -3.8 653,731 + BT0530 0.42 -3.7 653,732 - BT0530 0.42 -2.7 653,879 + BT0530 0.57 -2.4 653,973 - BT0530 0.66 -4.0 653,995 - BT0530 0.68 -0.9 654,154 - BT0530 0.84 -2.2 654,191 + BT0530 0.88 -4.1 654,248 + -4.8 654,250 + -1.9 654,251 + -2.7 654,275 - -1.7 654,293 + -5.2 654,296 - -3.5 654,416 - BT0531 0.18 -2.8 654,451 + BT0531 0.24 -2.9 654,541 + BT0531 0.40 -2.8 654,575 - BT0531 0.46 -2.4 654,688 - BT0531 0.66 -2.7 654,739 + BT0531 0.75 -0.4 654,999 + -2.8 655,000 - -2.7 655,011 + -4.1 655,250 + -0.4
Or see this region's nucleotide sequence