Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0112 and BT0113 are separated by 25 nucleotides BT0113 and BT0114 are separated by 2 nucleotides BT0114 and BT0115 are separated by 12 nucleotides BT0115 and BT0116 are separated by 4 nucleotides
BT0112: BT0112 - putative permease (NCBI ptt file), at 104,093 to 104,998
BT0112
BT0113: BT0113 - hypothetical protein (NCBI ptt file), at 105,024 to 105,524
BT0113
BT0114: BT0114 - putative symporter, arsenic resistance membrane protein (NCBI ptt file), at 105,527 to 106,573
BT0114
BT0115: BT0115 - arsenate reductase (NCBI ptt file), at 106,586 to 107,014
BT0115
BT0116: BT0116 - arsenical pump-driving ATPase (NCBI ptt file), at 107,019 to 108,731
BT0116
Position (kb) 105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2 at 104.666 kb on - strand, within BT0112 at 104.690 kb on - strand, within BT0112 at 104.693 kb on + strand, within BT0112 at 104.695 kb on + strand, within BT0112 at 104.695 kb on + strand, within BT0112 at 104.723 kb on + strand, within BT0112 at 104.834 kb on + strand, within BT0112 at 104.893 kb on + strand, within BT0112 at 104.999 kb on - strand at 105.018 kb on + strand at 105.195 kb on + strand, within BT0113 at 105.367 kb on + strand, within BT0113 at 105.368 kb on - strand, within BT0113 at 105.383 kb on + strand, within BT0113 at 105.429 kb on + strand, within BT0113 at 105.432 kb on - strand, within BT0113 at 105.432 kb on - strand, within BT0113 at 105.453 kb on + strand, within BT0113 at 105.453 kb on + strand, within BT0113 at 105.460 kb on - strand, within BT0113 at 105.492 kb on + strand at 105.528 kb on + strand at 105.529 kb on - strand at 105.580 kb on + strand at 105.580 kb on + strand at 105.581 kb on - strand at 105.815 kb on - strand, within BT0114 at 105.818 kb on + strand, within BT0114 at 105.935 kb on + strand, within BT0114 at 105.935 kb on + strand, within BT0114 at 105.968 kb on + strand, within BT0114 at 105.971 kb on + strand, within BT0114 at 106.017 kb on - strand, within BT0114 at 106.018 kb on + strand, within BT0114 at 106.094 kb on + strand, within BT0114 at 106.177 kb on + strand, within BT0114 at 106.216 kb on - strand, within BT0114 at 106.268 kb on + strand, within BT0114 at 106.269 kb on - strand, within BT0114 at 106.269 kb on - strand, within BT0114 at 106.272 kb on + strand, within BT0114 at 106.272 kb on + strand, within BT0114 at 106.272 kb on + strand, within BT0114 at 106.273 kb on - strand, within BT0114 at 106.395 kb on + strand, within BT0114 at 106.427 kb on + strand, within BT0114 at 106.427 kb on + strand, within BT0114 at 106.482 kb on + strand at 106.483 kb on - strand at 106.483 kb on - strand at 106.511 kb on - strand at 106.529 kb on - strand at 106.537 kb on - strand at 106.640 kb on + strand, within BT0115 at 106.640 kb on + strand, within BT0115 at 106.747 kb on + strand, within BT0115 at 106.794 kb on + strand, within BT0115 at 106.815 kb on + strand, within BT0115 at 106.877 kb on + strand, within BT0115 at 106.987 kb on + strand at 107.020 kb on + strand at 107.020 kb on + strand at 107.154 kb on + strand at 107.277 kb on + strand, within BT0116 at 107.332 kb on - strand, within BT0116 at 107.494 kb on - strand, within BT0116 at 107.498 kb on - strand, within BT0116
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 104,666 - BT0112 0.63 -1.5 104,690 - BT0112 0.66 -1.1 104,693 + BT0112 0.66 -0.3 104,695 + BT0112 0.66 -2.0 104,695 + BT0112 0.66 -0.9 104,723 + BT0112 0.70 +0.6 104,834 + BT0112 0.82 -1.0 104,893 + BT0112 0.88 +1.2 104,999 - -1.0 105,018 + -2.5 105,195 + BT0113 0.34 +1.0 105,367 + BT0113 0.68 +0.5 105,368 - BT0113 0.69 +0.1 105,383 + BT0113 0.72 +0.2 105,429 + BT0113 0.81 -1.2 105,432 - BT0113 0.81 -1.1 105,432 - BT0113 0.81 -2.4 105,453 + BT0113 0.86 +0.1 105,453 + BT0113 0.86 -0.5 105,460 - BT0113 0.87 -1.0 105,492 + -0.3 105,528 + -1.4 105,529 - -1.2 105,580 + -0.1 105,580 + -0.4 105,581 - -1.4 105,815 - BT0114 0.28 +0.0 105,818 + BT0114 0.28 +0.1 105,935 + BT0114 0.39 -0.9 105,935 + BT0114 0.39 -0.6 105,968 + BT0114 0.42 -2.5 105,971 + BT0114 0.42 -0.5 106,017 - BT0114 0.47 -1.7 106,018 + BT0114 0.47 -0.6 106,094 + BT0114 0.54 +0.5 106,177 + BT0114 0.62 -0.9 106,216 - BT0114 0.66 -2.3 106,268 + BT0114 0.71 +0.8 106,269 - BT0114 0.71 -0.9 106,269 - BT0114 0.71 -1.3 106,272 + BT0114 0.71 -0.4 106,272 + BT0114 0.71 -1.5 106,272 + BT0114 0.71 -0.4 106,273 - BT0114 0.71 -1.4 106,395 + BT0114 0.83 -0.2 106,427 + BT0114 0.86 -1.8 106,427 + BT0114 0.86 -1.8 106,482 + +0.8 106,483 - -0.7 106,483 - -1.2 106,511 - -0.5 106,529 - -1.2 106,537 - -0.6 106,640 + BT0115 0.13 +0.1 106,640 + BT0115 0.13 -0.1 106,747 + BT0115 0.38 +0.3 106,794 + BT0115 0.48 +0.2 106,815 + BT0115 0.53 +0.7 106,877 + BT0115 0.68 -1.5 106,987 + +2.1 107,020 + +0.3 107,020 + +0.8 107,154 + +0.3 107,277 + BT0116 0.15 -1.2 107,332 - BT0116 0.18 -2.1 107,494 - BT0116 0.28 -2.0 107,498 - BT0116 0.28 +0.5
Or see this region's nucleotide sequence