Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_838

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_837 and Pf6N2E2_838 are separated by 1 nucleotidesPf6N2E2_838 and Pf6N2E2_839 are separated by 123 nucleotides Pf6N2E2_837 - HlyD family secretion protein, at 979,384 to 980,706 _837 Pf6N2E2_838 - Type I secretion outer membrane protein, TolC precursor, at 980,708 to 982,015 _838 Pf6N2E2_839 - Alkaline phosphatase (EC 3.1.3.1), at 982,139 to 984,760 _839 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 979.966 kb on + strand, within Pf6N2E2_837at 979.967 kb on - strand, within Pf6N2E2_837at 979.967 kb on - strand, within Pf6N2E2_837at 979.979 kb on + strand, within Pf6N2E2_837at 980.012 kb on - strand, within Pf6N2E2_837at 980.012 kb on - strand, within Pf6N2E2_837at 980.072 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.203 kb on + strand, within Pf6N2E2_837at 980.204 kb on - strand, within Pf6N2E2_837at 980.204 kb on - strand, within Pf6N2E2_837at 980.257 kb on - strand, within Pf6N2E2_837at 980.457 kb on + strand, within Pf6N2E2_837at 980.458 kb on - strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.533 kb on + strand, within Pf6N2E2_837at 980.534 kb on - strand, within Pf6N2E2_837at 980.534 kb on - strand, within Pf6N2E2_837at 980.534 kb on - strand, within Pf6N2E2_837at 980.536 kb on + strand, within Pf6N2E2_837at 980.537 kb on - strand, within Pf6N2E2_837at 980.537 kb on - strand, within Pf6N2E2_837at 980.653 kb on + strandat 980.767 kb on + strandat 980.767 kb on + strandat 980.768 kb on - strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.771 kb on + strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.772 kb on - strandat 980.886 kb on + strand, within Pf6N2E2_838at 980.886 kb on + strand, within Pf6N2E2_838at 980.886 kb on + strand, within Pf6N2E2_838at 980.999 kb on + strand, within Pf6N2E2_838at 980.999 kb on + strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.000 kb on - strand, within Pf6N2E2_838at 981.023 kb on + strand, within Pf6N2E2_838at 981.032 kb on + strand, within Pf6N2E2_838at 981.032 kb on + strand, within Pf6N2E2_838at 981.033 kb on - strand, within Pf6N2E2_838at 981.033 kb on - strand, within Pf6N2E2_838at 981.033 kb on - strand, within Pf6N2E2_838at 981.110 kb on + strand, within Pf6N2E2_838at 981.408 kb on - strand, within Pf6N2E2_838at 981.623 kb on + strand, within Pf6N2E2_838at 981.738 kb on - strand, within Pf6N2E2_838at 981.738 kb on - strand, within Pf6N2E2_838at 981.738 kb on - strand, within Pf6N2E2_838at 981.738 kb on - strand, within Pf6N2E2_838at 981.738 kb on - strand, within Pf6N2E2_838at 981.861 kb on + strand, within Pf6N2E2_838at 981.861 kb on + strand, within Pf6N2E2_838at 981.861 kb on + strand, within Pf6N2E2_838at 981.871 kb on + strand, within Pf6N2E2_838at 981.871 kb on + strand, within Pf6N2E2_838at 981.871 kb on + strand, within Pf6N2E2_838at 981.871 kb on + strand, within Pf6N2E2_838at 981.917 kb on + strandat 981.917 kb on + strandat 981.918 kb on - strandat 982.013 kb on + strandat 982.013 kb on + strandat 982.013 kb on + strandat 982.014 kb on - strandat 982.048 kb on + strandat 982.048 kb on + strandat 982.048 kb on + strandat 982.091 kb on + strandat 982.139 kb on - strandat 982.158 kb on - strandat 982.163 kb on + strandat 982.223 kb on + strandat 982.224 kb on - strandat 982.224 kb on - strandat 982.224 kb on - strandat 982.252 kb on + strandat 982.274 kb on + strandat 982.275 kb on - strandat 982.313 kb on + strandat 982.313 kb on + strandat 982.313 kb on + strandat 982.331 kb on + strandat 982.332 kb on - strandat 982.332 kb on - strandat 982.332 kb on - strandat 982.343 kb on + strandat 982.343 kb on + strandat 982.343 kb on + strandat 982.343 kb on + strandat 982.344 kb on - strandat 982.344 kb on - strandat 982.375 kb on + strandat 982.375 kb on + strandat 982.480 kb on + strand, within Pf6N2E2_839at 982.480 kb on + strand, within Pf6N2E2_839at 982.589 kb on + strand, within Pf6N2E2_839at 982.590 kb on - strand, within Pf6N2E2_839at 982.595 kb on + strand, within Pf6N2E2_839at 982.595 kb on + strand, within Pf6N2E2_839at 982.705 kb on + strand, within Pf6N2E2_839at 982.706 kb on - strand, within Pf6N2E2_839at 982.718 kb on + strand, within Pf6N2E2_839at 982.719 kb on - strand, within Pf6N2E2_839at 982.730 kb on + strand, within Pf6N2E2_839at 982.730 kb on + strand, within Pf6N2E2_839at 982.730 kb on + strand, within Pf6N2E2_839at 982.731 kb on - strand, within Pf6N2E2_839at 982.731 kb on - strand, within Pf6N2E2_839at 982.736 kb on + strand, within Pf6N2E2_839at 982.826 kb on + strand, within Pf6N2E2_839at 983.015 kb on + strand, within Pf6N2E2_839

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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979,966 + Pf6N2E2_837 0.44 -0.7
979,967 - Pf6N2E2_837 0.44 +0.8
979,967 - Pf6N2E2_837 0.44 +0.6
979,979 + Pf6N2E2_837 0.45 +0.4
980,012 - Pf6N2E2_837 0.47 -0.6
980,012 - Pf6N2E2_837 0.47 -0.2
980,072 + Pf6N2E2_837 0.52 -0.2
980,203 + Pf6N2E2_837 0.62 +1.1
980,203 + Pf6N2E2_837 0.62 -0.9
980,203 + Pf6N2E2_837 0.62 -2.0
980,203 + Pf6N2E2_837 0.62 -2.1
980,203 + Pf6N2E2_837 0.62 -0.1
980,204 - Pf6N2E2_837 0.62 +0.8
980,204 - Pf6N2E2_837 0.62 -0.6
980,257 - Pf6N2E2_837 0.66 +0.4
980,457 + Pf6N2E2_837 0.81 +0.5
980,458 - Pf6N2E2_837 0.81 -1.2
980,533 + Pf6N2E2_837 0.87 +0.9
980,533 + Pf6N2E2_837 0.87 +0.1
980,533 + Pf6N2E2_837 0.87 -0.3
980,533 + Pf6N2E2_837 0.87 +0.4
980,534 - Pf6N2E2_837 0.87 -0.1
980,534 - Pf6N2E2_837 0.87 +0.4
980,534 - Pf6N2E2_837 0.87 -0.5
980,536 + Pf6N2E2_837 0.87 +0.1
980,537 - Pf6N2E2_837 0.87 +1.2
980,537 - Pf6N2E2_837 0.87 +0.1
980,653 + +0.3
980,767 + -0.8
980,767 + -0.3
980,768 - +1.4
980,771 + -0.2
980,771 + +0.7
980,771 + +1.2
980,771 + +1.6
980,771 + +1.4
980,771 + +0.0
980,771 + -1.1
980,771 + +1.1
980,771 + +1.0
980,771 + +1.0
980,771 + +0.7
980,771 + +0.5
980,772 - -0.4
980,772 - -1.3
980,772 - +0.8
980,772 - -0.9
980,772 - +0.0
980,772 - -0.2
980,772 - -0.2
980,772 - -0.2
980,886 + Pf6N2E2_838 0.14 -0.6
980,886 + Pf6N2E2_838 0.14 +0.5
980,886 + Pf6N2E2_838 0.14 -0.4
980,999 + Pf6N2E2_838 0.22 +0.2
980,999 + Pf6N2E2_838 0.22 -0.3
981,000 - Pf6N2E2_838 0.22 +1.7
981,000 - Pf6N2E2_838 0.22 -0.1
981,000 - Pf6N2E2_838 0.22 +0.8
981,000 - Pf6N2E2_838 0.22 +0.5
981,000 - Pf6N2E2_838 0.22 +1.0
981,000 - Pf6N2E2_838 0.22 -1.0
981,023 + Pf6N2E2_838 0.24 +0.0
981,032 + Pf6N2E2_838 0.25 -1.1
981,032 + Pf6N2E2_838 0.25 +0.4
981,033 - Pf6N2E2_838 0.25 -0.0
981,033 - Pf6N2E2_838 0.25 -1.6
981,033 - Pf6N2E2_838 0.25 +0.6
981,110 + Pf6N2E2_838 0.31 -0.8
981,408 - Pf6N2E2_838 0.54 -0.1
981,623 + Pf6N2E2_838 0.70 +0.3
981,738 - Pf6N2E2_838 0.79 -1.2
981,738 - Pf6N2E2_838 0.79 +1.4
981,738 - Pf6N2E2_838 0.79 +0.4
981,738 - Pf6N2E2_838 0.79 -0.9
981,738 - Pf6N2E2_838 0.79 +1.0
981,861 + Pf6N2E2_838 0.88 +0.9
981,861 + Pf6N2E2_838 0.88 +1.1
981,861 + Pf6N2E2_838 0.88 +0.1
981,871 + Pf6N2E2_838 0.89 +0.9
981,871 + Pf6N2E2_838 0.89 +0.0
981,871 + Pf6N2E2_838 0.89 +0.1
981,871 + Pf6N2E2_838 0.89 +0.1
981,917 + -2.6
981,917 + -2.7
981,918 - -0.4
982,013 + +0.3
982,013 + -0.5
982,013 + +0.5
982,014 - +0.3
982,048 + +0.5
982,048 + +1.5
982,048 + +1.4
982,091 + -2.2
982,139 - +0.5
982,158 - +0.6
982,163 + -1.9
982,223 + -0.2
982,224 - +0.8
982,224 - +0.1
982,224 - -0.9
982,252 + -0.3
982,274 + +0.8
982,275 - -1.2
982,313 + +1.4
982,313 + +1.2
982,313 + +0.2
982,331 + -1.4
982,332 - -0.3
982,332 - -0.6
982,332 - +0.1
982,343 + -0.1
982,343 + -1.6
982,343 + +1.6
982,343 + -1.8
982,344 - -2.4
982,344 - +0.2
982,375 + +0.8
982,375 + -0.5
982,480 + Pf6N2E2_839 0.13 -1.4
982,480 + Pf6N2E2_839 0.13 -1.8
982,589 + Pf6N2E2_839 0.17 +0.8
982,590 - Pf6N2E2_839 0.17 -0.3
982,595 + Pf6N2E2_839 0.17 +1.0
982,595 + Pf6N2E2_839 0.17 -0.0
982,705 + Pf6N2E2_839 0.22 +2.0
982,706 - Pf6N2E2_839 0.22 -0.5
982,718 + Pf6N2E2_839 0.22 +0.5
982,719 - Pf6N2E2_839 0.22 +1.2
982,730 + Pf6N2E2_839 0.23 +1.1
982,730 + Pf6N2E2_839 0.23 -2.9
982,730 + Pf6N2E2_839 0.23 -0.1
982,731 - Pf6N2E2_839 0.23 -1.8
982,731 - Pf6N2E2_839 0.23 +0.8
982,736 + Pf6N2E2_839 0.23 -1.2
982,826 + Pf6N2E2_839 0.26 +0.5
983,015 + Pf6N2E2_839 0.33 -0.2

Or see this region's nucleotide sequence