Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5542

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5541 and Pf6N2E2_5542 are separated by 17 nucleotidesPf6N2E2_5542 and Pf6N2E2_5543 are separated by 52 nucleotidesPf6N2E2_5543 and Pf6N2E2_5544 are separated by 81 nucleotides Pf6N2E2_5541 - TolA protein, at 6,355,936 to 6,357,012 _5541 Pf6N2E2_5542 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 6,357,030 to 6,358,310 _5542 Pf6N2E2_5543 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 6,358,363 to 6,358,860 _5543 Pf6N2E2_5544 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 6,358,942 to 6,359,706 _5544 Position (kb) 6357 6358 6359Strain fitness (log2 ratio) -3 -2 -1 0 1at 6358.299 kb on + strandat 6358.319 kb on + strandat 6358.321 kb on + strandat 6358.321 kb on + strandat 6358.321 kb on + strandat 6358.321 kb on + strandat 6358.328 kb on + strandat 6358.328 kb on + strandat 6358.332 kb on + strandat 6358.350 kb on + strandat 6358.350 kb on + strandat 6358.858 kb on + strandat 6358.858 kb on + strandat 6358.858 kb on + strandat 6358.889 kb on + strandat 6358.965 kb on + strandat 6358.965 kb on + strandat 6358.980 kb on + strandat 6359.192 kb on + strand, within Pf6N2E2_5544at 6359.193 kb on - strand, within Pf6N2E2_5544

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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6,358,299 + -1.3
6,358,319 + -1.2
6,358,321 + +0.2
6,358,321 + +0.3
6,358,321 + -2.6
6,358,321 + -1.5
6,358,328 + +1.1
6,358,328 + -1.2
6,358,332 + +0.9
6,358,350 + +0.6
6,358,350 + -2.6
6,358,858 + -1.6
6,358,858 + -0.5
6,358,858 + -0.5
6,358,889 + -1.7
6,358,965 + -2.6
6,358,965 + -2.1
6,358,980 + -3.2
6,359,192 + Pf6N2E2_5544 0.33 +0.8
6,359,193 - Pf6N2E2_5544 0.33 -1.1

Or see this region's nucleotide sequence