Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5541 and Pf6N2E2_5542 are separated by 17 nucleotides Pf6N2E2_5542 and Pf6N2E2_5543 are separated by 52 nucleotides Pf6N2E2_5543 and Pf6N2E2_5544 are separated by 81 nucleotides
Pf6N2E2_5541 - TolA protein, at 6,355,936 to 6,357,012
_5541
Pf6N2E2_5542 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 6,357,030 to 6,358,310
_5542
Pf6N2E2_5543 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 6,358,363 to 6,358,860
_5543
Pf6N2E2_5544 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 6,358,942 to 6,359,706
_5544
Position (kb)
6357
6358
6359 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6358.299 kb on + strand at 6358.319 kb on + strand at 6358.321 kb on + strand at 6358.321 kb on + strand at 6358.321 kb on + strand at 6358.321 kb on + strand at 6358.328 kb on + strand at 6358.328 kb on + strand at 6358.332 kb on + strand at 6358.350 kb on + strand at 6358.350 kb on + strand at 6358.858 kb on + strand at 6358.858 kb on + strand at 6358.858 kb on + strand at 6358.889 kb on + strand at 6358.965 kb on + strand at 6358.965 kb on + strand at 6358.980 kb on + strand at 6359.192 kb on + strand, within Pf6N2E2_5544 at 6359.193 kb on - strand, within Pf6N2E2_5544
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 6,358,299 + -1.3 6,358,319 + -1.2 6,358,321 + +0.2 6,358,321 + +0.3 6,358,321 + -2.6 6,358,321 + -1.5 6,358,328 + +1.1 6,358,328 + -1.2 6,358,332 + +0.9 6,358,350 + +0.6 6,358,350 + -2.6 6,358,858 + -1.6 6,358,858 + -0.5 6,358,858 + -0.5 6,358,889 + -1.7 6,358,965 + -2.6 6,358,965 + -2.1 6,358,980 + -3.2 6,359,192 + Pf6N2E2_5544 0.33 +0.8 6,359,193 - Pf6N2E2_5544 0.33 -1.1
Or see this region's nucleotide sequence