Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4697 and Pf6N2E2_4698 are separated by 142 nucleotides Pf6N2E2_4698 and Pf6N2E2_4699 are separated by 100 nucleotides Pf6N2E2_4699 and Pf6N2E2_4700 are separated by 234 nucleotides
Pf6N2E2_4697 - hypothetical protein, at 5,430,286 to 5,431,062
_4697
Pf6N2E2_4698 - putative DNA binding protein, at 5,431,205 to 5,431,531
_4698
Pf6N2E2_4699 - FIG00953563: hypothetical protein, at 5,431,632 to 5,432,033
_4699
Pf6N2E2_4700 - Microsomal dipeptidase (EC 3.4.13.19), at 5,432,268 to 5,433,245
_4700
Position (kb) 5431
5432 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5430.237 kb on - strand at 5430.329 kb on + strand at 5430.329 kb on + strand at 5430.329 kb on + strand at 5430.330 kb on - strand at 5430.330 kb on - strand at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.380 kb on + strand, within Pf6N2E2_4697 at 5430.381 kb on - strand, within Pf6N2E2_4697 at 5430.381 kb on - strand, within Pf6N2E2_4697 at 5430.441 kb on + strand, within Pf6N2E2_4697 at 5430.442 kb on - strand, within Pf6N2E2_4697 at 5430.503 kb on + strand, within Pf6N2E2_4697 at 5430.503 kb on + strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.504 kb on - strand, within Pf6N2E2_4697 at 5430.556 kb on - strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.716 kb on + strand, within Pf6N2E2_4697 at 5430.717 kb on - strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.737 kb on + strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.738 kb on - strand, within Pf6N2E2_4697 at 5430.879 kb on + strand, within Pf6N2E2_4697 at 5430.879 kb on + strand, within Pf6N2E2_4697 at 5430.880 kb on - strand, within Pf6N2E2_4697 at 5430.880 kb on - strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.922 kb on + strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5430.923 kb on - strand, within Pf6N2E2_4697 at 5431.017 kb on + strand at 5431.023 kb on + strand at 5431.024 kb on - strand at 5431.024 kb on - strand at 5431.024 kb on - strand at 5431.027 kb on + strand at 5431.027 kb on + strand at 5431.028 kb on - strand at 5431.028 kb on - strand at 5431.034 kb on + strand at 5431.034 kb on + strand at 5431.034 kb on + strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.035 kb on - strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.036 kb on + strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.037 kb on - strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.062 kb on + strand at 5431.063 kb on - strand at 5431.063 kb on - strand at 5431.063 kb on - strand at 5431.078 kb on + strand at 5431.079 kb on - strand at 5431.086 kb on - strand at 5431.124 kb on + strand at 5431.125 kb on - strand at 5431.125 kb on - strand at 5431.148 kb on - strand at 5431.160 kb on - strand at 5431.160 kb on - strand at 5431.160 kb on - strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.176 kb on + strand at 5431.177 kb on - strand at 5431.177 kb on - strand at 5431.177 kb on - strand at 5431.206 kb on + strand at 5431.207 kb on - strand at 5431.207 kb on - strand at 5431.231 kb on + strand at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.449 kb on + strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.450 kb on - strand, within Pf6N2E2_4698 at 5431.458 kb on + strand, within Pf6N2E2_4698 at 5431.511 kb on - strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.516 kb on + strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.517 kb on - strand at 5431.573 kb on + strand at 5431.576 kb on - strand at 5431.677 kb on + strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.678 kb on - strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.711 kb on + strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.712 kb on - strand, within Pf6N2E2_4699 at 5431.913 kb on - strand, within Pf6N2E2_4699 at 5432.127 kb on + strand at 5432.127 kb on + strand at 5432.127 kb on + strand at 5432.128 kb on - strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.203 kb on + strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand at 5432.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 5,430,237 - +0.5 5,430,329 + -1.1 5,430,329 + +1.1 5,430,329 + +0.1 5,430,330 - -0.1 5,430,330 - -0.5 5,430,380 + Pf6N2E2_4697 0.12 -0.4 5,430,380 + Pf6N2E2_4697 0.12 +1.0 5,430,380 + Pf6N2E2_4697 0.12 +1.8 5,430,380 + Pf6N2E2_4697 0.12 -1.0 5,430,380 + Pf6N2E2_4697 0.12 +0.6 5,430,380 + Pf6N2E2_4697 0.12 +0.8 5,430,381 - Pf6N2E2_4697 0.12 -0.5 5,430,381 - Pf6N2E2_4697 0.12 -0.8 5,430,441 + Pf6N2E2_4697 0.20 -1.2 5,430,442 - Pf6N2E2_4697 0.20 -0.9 5,430,503 + Pf6N2E2_4697 0.28 +1.3 5,430,503 + Pf6N2E2_4697 0.28 +1.2 5,430,504 - Pf6N2E2_4697 0.28 -2.5 5,430,504 - Pf6N2E2_4697 0.28 -1.0 5,430,504 - Pf6N2E2_4697 0.28 -0.9 5,430,504 - Pf6N2E2_4697 0.28 +0.0 5,430,504 - Pf6N2E2_4697 0.28 -2.2 5,430,504 - Pf6N2E2_4697 0.28 +1.2 5,430,556 - Pf6N2E2_4697 0.35 -3.1 5,430,716 + Pf6N2E2_4697 0.55 +1.1 5,430,716 + Pf6N2E2_4697 0.55 -0.5 5,430,716 + Pf6N2E2_4697 0.55 -0.2 5,430,717 - Pf6N2E2_4697 0.55 +0.2 5,430,737 + Pf6N2E2_4697 0.58 -0.3 5,430,737 + Pf6N2E2_4697 0.58 -0.9 5,430,737 + Pf6N2E2_4697 0.58 +1.5 5,430,738 - Pf6N2E2_4697 0.58 -0.2 5,430,738 - Pf6N2E2_4697 0.58 +0.4 5,430,738 - Pf6N2E2_4697 0.58 +0.4 5,430,738 - Pf6N2E2_4697 0.58 +0.6 5,430,879 + Pf6N2E2_4697 0.76 +0.3 5,430,879 + Pf6N2E2_4697 0.76 +0.7 5,430,880 - Pf6N2E2_4697 0.76 -0.0 5,430,880 - Pf6N2E2_4697 0.76 +1.1 5,430,922 + Pf6N2E2_4697 0.82 -0.1 5,430,922 + Pf6N2E2_4697 0.82 -2.5 5,430,922 + Pf6N2E2_4697 0.82 -0.2 5,430,922 + Pf6N2E2_4697 0.82 -0.4 5,430,923 - Pf6N2E2_4697 0.82 +0.0 5,430,923 - Pf6N2E2_4697 0.82 +0.4 5,430,923 - Pf6N2E2_4697 0.82 +0.7 5,430,923 - Pf6N2E2_4697 0.82 +1.3 5,430,923 - Pf6N2E2_4697 0.82 -0.7 5,430,923 - Pf6N2E2_4697 0.82 -1.2 5,431,017 + +0.6 5,431,023 + -0.5 5,431,024 - +0.7 5,431,024 - -0.7 5,431,024 - +1.1 5,431,027 + +1.9 5,431,027 + +0.6 5,431,028 - +0.5 5,431,028 - -0.3 5,431,034 + +0.3 5,431,034 + -0.5 5,431,034 + -0.1 5,431,035 - -0.6 5,431,035 - -0.6 5,431,035 - -1.5 5,431,035 - -0.5 5,431,035 - +0.9 5,431,035 - +1.4 5,431,036 + +0.3 5,431,036 + +0.4 5,431,036 + -0.1 5,431,036 + +0.3 5,431,037 - -1.1 5,431,037 - +1.7 5,431,037 - -0.1 5,431,037 - +0.9 5,431,037 - +0.4 5,431,037 - +0.9 5,431,062 + +0.1 5,431,062 + -0.6 5,431,062 + -1.2 5,431,062 + +0.6 5,431,063 - +0.4 5,431,063 - +0.1 5,431,063 - +0.8 5,431,078 + +0.9 5,431,079 - -0.4 5,431,086 - -0.7 5,431,124 + -0.6 5,431,125 - -1.7 5,431,125 - -0.4 5,431,148 - +1.4 5,431,160 - -1.5 5,431,160 - +0.1 5,431,160 - -1.2 5,431,176 + -0.1 5,431,176 + +0.8 5,431,176 + +0.1 5,431,176 + -0.6 5,431,176 + +0.2 5,431,177 - +1.0 5,431,177 - -1.3 5,431,177 - +1.5 5,431,206 + -1.0 5,431,207 - +0.0 5,431,207 - -0.2 5,431,231 + +0.8 5,431,449 + Pf6N2E2_4698 0.75 -0.9 5,431,449 + Pf6N2E2_4698 0.75 +1.4 5,431,449 + Pf6N2E2_4698 0.75 +0.6 5,431,449 + Pf6N2E2_4698 0.75 +1.6 5,431,449 + Pf6N2E2_4698 0.75 +0.5 5,431,449 + Pf6N2E2_4698 0.75 +2.2 5,431,449 + Pf6N2E2_4698 0.75 +0.1 5,431,449 + Pf6N2E2_4698 0.75 +1.2 5,431,449 + Pf6N2E2_4698 0.75 -0.9 5,431,449 + Pf6N2E2_4698 0.75 +0.2 5,431,449 + Pf6N2E2_4698 0.75 +0.5 5,431,450 - Pf6N2E2_4698 0.75 +1.2 5,431,450 - Pf6N2E2_4698 0.75 +0.1 5,431,450 - Pf6N2E2_4698 0.75 +0.5 5,431,450 - Pf6N2E2_4698 0.75 +1.1 5,431,450 - Pf6N2E2_4698 0.75 +1.4 5,431,458 + Pf6N2E2_4698 0.77 +0.2 5,431,511 - +1.7 5,431,516 + -0.7 5,431,516 + +1.8 5,431,516 + -0.1 5,431,516 + +1.0 5,431,516 + +1.8 5,431,516 + +0.5 5,431,517 - -0.5 5,431,517 - +0.3 5,431,517 - +0.6 5,431,517 - +0.5 5,431,517 - -1.6 5,431,517 - +0.1 5,431,517 - -0.3 5,431,517 - -2.1 5,431,517 - +0.9 5,431,517 - +0.1 5,431,573 + +0.3 5,431,576 - +0.2 5,431,677 + Pf6N2E2_4699 0.11 -0.7 5,431,678 - Pf6N2E2_4699 0.11 -0.5 5,431,678 - Pf6N2E2_4699 0.11 -0.2 5,431,678 - Pf6N2E2_4699 0.11 +0.8 5,431,711 + Pf6N2E2_4699 0.20 +0.7 5,431,711 + Pf6N2E2_4699 0.20 +0.3 5,431,712 - Pf6N2E2_4699 0.20 -0.4 5,431,712 - Pf6N2E2_4699 0.20 +0.0 5,431,913 - Pf6N2E2_4699 0.70 +0.5 5,432,127 + +0.3 5,432,127 + +0.5 5,432,127 + -1.9 5,432,128 - +1.5 5,432,203 + -2.0 5,432,203 + -1.3 5,432,203 + +0.2 5,432,203 + -2.9 5,432,203 + -0.6 5,432,203 + -0.2 5,432,204 - -0.1 5,432,204 - -1.9 5,432,204 - -3.9 5,432,204 - +0.6 5,432,204 - +0.3
Or see this region's nucleotide sequence