Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4356

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4354 and Pf6N2E2_4355 overlap by 4 nucleotidesPf6N2E2_4355 and Pf6N2E2_4356 are separated by 6 nucleotidesPf6N2E2_4356 and Pf6N2E2_4357 are separated by 188 nucleotides Pf6N2E2_4354 - Ferric siderophore transport system, periplasmic binding protein TonB, at 5,085,347 to 5,086,102 _4354 Pf6N2E2_4355 - Biopolymer transport protein ExbD/TolR, at 5,086,099 to 5,086,527 _4355 Pf6N2E2_4356 - MotA/TolQ/ExbB proton channel family protein, at 5,086,534 to 5,087,505 _4356 Pf6N2E2_4357 - Nucleoside-diphosphate-sugar epimerases, at 5,087,694 to 5,088,551 _4357 Position (kb) 5086 5087 5088Strain fitness (log2 ratio) -2 -1 0 1 2at 5087.615 kb on - strandat 5087.665 kb on - strandat 5087.713 kb on + strandat 5087.713 kb on + strandat 5087.713 kb on + strandat 5087.714 kb on - strandat 5087.714 kb on - strandat 5087.733 kb on - strandat 5087.782 kb on - strand, within Pf6N2E2_4357at 5087.782 kb on - strand, within Pf6N2E2_4357at 5087.782 kb on - strand, within Pf6N2E2_4357at 5087.782 kb on - strand, within Pf6N2E2_4357at 5087.889 kb on + strand, within Pf6N2E2_4357at 5087.890 kb on - strand, within Pf6N2E2_4357at 5087.890 kb on - strand, within Pf6N2E2_4357at 5087.898 kb on + strand, within Pf6N2E2_4357at 5087.898 kb on + strand, within Pf6N2E2_4357at 5087.898 kb on + strand, within Pf6N2E2_4357at 5087.899 kb on - strand, within Pf6N2E2_4357at 5087.899 kb on - strand, within Pf6N2E2_4357at 5087.946 kb on + strand, within Pf6N2E2_4357at 5087.946 kb on + strand, within Pf6N2E2_4357at 5087.946 kb on + strand, within Pf6N2E2_4357at 5087.946 kb on + strand, within Pf6N2E2_4357at 5087.946 kb on + strand, within Pf6N2E2_4357at 5087.947 kb on - strand, within Pf6N2E2_4357at 5087.947 kb on - strand, within Pf6N2E2_4357at 5088.094 kb on - strand, within Pf6N2E2_4357at 5088.177 kb on + strand, within Pf6N2E2_4357at 5088.177 kb on + strand, within Pf6N2E2_4357at 5088.177 kb on + strand, within Pf6N2E2_4357at 5088.177 kb on + strand, within Pf6N2E2_4357at 5088.177 kb on + strand, within Pf6N2E2_4357at 5088.177 kb on + strand, within Pf6N2E2_4357at 5088.177 kb on + strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.178 kb on - strand, within Pf6N2E2_4357at 5088.249 kb on + strand, within Pf6N2E2_4357at 5088.250 kb on - strand, within Pf6N2E2_4357at 5088.250 kb on - strand, within Pf6N2E2_4357at 5088.339 kb on + strand, within Pf6N2E2_4357at 5088.339 kb on + strand, within Pf6N2E2_4357at 5088.339 kb on + strand, within Pf6N2E2_4357at 5088.339 kb on + strand, within Pf6N2E2_4357at 5088.339 kb on + strand, within Pf6N2E2_4357at 5088.340 kb on - strand, within Pf6N2E2_4357at 5088.340 kb on - strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.399 kb on + strand, within Pf6N2E2_4357at 5088.400 kb on - strand, within Pf6N2E2_4357at 5088.400 kb on - strand, within Pf6N2E2_4357at 5088.400 kb on - strand, within Pf6N2E2_4357at 5088.400 kb on - strand, within Pf6N2E2_4357at 5088.400 kb on - strand, within Pf6N2E2_4357at 5088.400 kb on - strand, within Pf6N2E2_4357

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,087,615 - -0.1
5,087,665 - +0.9
5,087,713 + +0.9
5,087,713 + -1.1
5,087,713 + -2.7
5,087,714 - +1.6
5,087,714 - +0.7
5,087,733 - -1.0
5,087,782 - Pf6N2E2_4357 0.10 +2.0
5,087,782 - Pf6N2E2_4357 0.10 +1.2
5,087,782 - Pf6N2E2_4357 0.10 -0.1
5,087,782 - Pf6N2E2_4357 0.10 -0.6
5,087,889 + Pf6N2E2_4357 0.23 -0.6
5,087,890 - Pf6N2E2_4357 0.23 -0.5
5,087,890 - Pf6N2E2_4357 0.23 -1.2
5,087,898 + Pf6N2E2_4357 0.24 -1.5
5,087,898 + Pf6N2E2_4357 0.24 +0.8
5,087,898 + Pf6N2E2_4357 0.24 +1.2
5,087,899 - Pf6N2E2_4357 0.24 +0.1
5,087,899 - Pf6N2E2_4357 0.24 -0.8
5,087,946 + Pf6N2E2_4357 0.29 +0.5
5,087,946 + Pf6N2E2_4357 0.29 -1.8
5,087,946 + Pf6N2E2_4357 0.29 +0.1
5,087,946 + Pf6N2E2_4357 0.29 -1.2
5,087,946 + Pf6N2E2_4357 0.29 +0.1
5,087,947 - Pf6N2E2_4357 0.29 -0.3
5,087,947 - Pf6N2E2_4357 0.29 -0.9
5,088,094 - Pf6N2E2_4357 0.47 -1.7
5,088,177 + Pf6N2E2_4357 0.56 +0.4
5,088,177 + Pf6N2E2_4357 0.56 -2.7
5,088,177 + Pf6N2E2_4357 0.56 +0.0
5,088,177 + Pf6N2E2_4357 0.56 +0.2
5,088,177 + Pf6N2E2_4357 0.56 +0.6
5,088,177 + Pf6N2E2_4357 0.56 -0.4
5,088,177 + Pf6N2E2_4357 0.56 -0.0
5,088,178 - Pf6N2E2_4357 0.56 -0.6
5,088,178 - Pf6N2E2_4357 0.56 -0.8
5,088,178 - Pf6N2E2_4357 0.56 +0.5
5,088,178 - Pf6N2E2_4357 0.56 -0.1
5,088,178 - Pf6N2E2_4357 0.56 +1.3
5,088,178 - Pf6N2E2_4357 0.56 +0.6
5,088,178 - Pf6N2E2_4357 0.56 +1.5
5,088,178 - Pf6N2E2_4357 0.56 -0.1
5,088,249 + Pf6N2E2_4357 0.65 -0.3
5,088,250 - Pf6N2E2_4357 0.65 +0.7
5,088,250 - Pf6N2E2_4357 0.65 +1.9
5,088,339 + Pf6N2E2_4357 0.75 +0.6
5,088,339 + Pf6N2E2_4357 0.75 +0.5
5,088,339 + Pf6N2E2_4357 0.75 -1.4
5,088,339 + Pf6N2E2_4357 0.75 +0.6
5,088,339 + Pf6N2E2_4357 0.75 -0.6
5,088,340 - Pf6N2E2_4357 0.75 -0.9
5,088,340 - Pf6N2E2_4357 0.75 +0.7
5,088,399 + Pf6N2E2_4357 0.82 -0.5
5,088,399 + Pf6N2E2_4357 0.82 +0.2
5,088,399 + Pf6N2E2_4357 0.82 -1.3
5,088,399 + Pf6N2E2_4357 0.82 -0.5
5,088,399 + Pf6N2E2_4357 0.82 +0.5
5,088,399 + Pf6N2E2_4357 0.82 -1.4
5,088,399 + Pf6N2E2_4357 0.82 +0.4
5,088,399 + Pf6N2E2_4357 0.82 +0.5
5,088,400 - Pf6N2E2_4357 0.82 +0.5
5,088,400 - Pf6N2E2_4357 0.82 -0.0
5,088,400 - Pf6N2E2_4357 0.82 +1.2
5,088,400 - Pf6N2E2_4357 0.82 +0.5
5,088,400 - Pf6N2E2_4357 0.82 +0.3
5,088,400 - Pf6N2E2_4357 0.82 +0.7

Or see this region's nucleotide sequence