Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4354 and Pf6N2E2_4355 overlap by 4 nucleotides Pf6N2E2_4355 and Pf6N2E2_4356 are separated by 6 nucleotides Pf6N2E2_4356 and Pf6N2E2_4357 are separated by 188 nucleotides
Pf6N2E2_4354 - Ferric siderophore transport system, periplasmic binding protein TonB, at 5,085,347 to 5,086,102
_4354
Pf6N2E2_4355 - Biopolymer transport protein ExbD/TolR, at 5,086,099 to 5,086,527
_4355
Pf6N2E2_4356 - MotA/TolQ/ExbB proton channel family protein, at 5,086,534 to 5,087,505
_4356
Pf6N2E2_4357 - Nucleoside-diphosphate-sugar epimerases, at 5,087,694 to 5,088,551
_4357
Position (kb)
5086
5087
5088 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5087.615 kb on - strand at 5087.665 kb on - strand at 5087.713 kb on + strand at 5087.713 kb on + strand at 5087.713 kb on + strand at 5087.714 kb on - strand at 5087.714 kb on - strand at 5087.733 kb on - strand at 5087.782 kb on - strand, within Pf6N2E2_4357 at 5087.782 kb on - strand, within Pf6N2E2_4357 at 5087.782 kb on - strand, within Pf6N2E2_4357 at 5087.782 kb on - strand, within Pf6N2E2_4357 at 5087.889 kb on + strand, within Pf6N2E2_4357 at 5087.890 kb on - strand, within Pf6N2E2_4357 at 5087.890 kb on - strand, within Pf6N2E2_4357 at 5087.898 kb on + strand, within Pf6N2E2_4357 at 5087.898 kb on + strand, within Pf6N2E2_4357 at 5087.898 kb on + strand, within Pf6N2E2_4357 at 5087.899 kb on - strand, within Pf6N2E2_4357 at 5087.899 kb on - strand, within Pf6N2E2_4357 at 5087.946 kb on + strand, within Pf6N2E2_4357 at 5087.946 kb on + strand, within Pf6N2E2_4357 at 5087.946 kb on + strand, within Pf6N2E2_4357 at 5087.946 kb on + strand, within Pf6N2E2_4357 at 5087.946 kb on + strand, within Pf6N2E2_4357 at 5087.947 kb on - strand, within Pf6N2E2_4357 at 5087.947 kb on - strand, within Pf6N2E2_4357 at 5088.094 kb on - strand, within Pf6N2E2_4357 at 5088.177 kb on + strand, within Pf6N2E2_4357 at 5088.177 kb on + strand, within Pf6N2E2_4357 at 5088.177 kb on + strand, within Pf6N2E2_4357 at 5088.177 kb on + strand, within Pf6N2E2_4357 at 5088.177 kb on + strand, within Pf6N2E2_4357 at 5088.177 kb on + strand, within Pf6N2E2_4357 at 5088.177 kb on + strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.178 kb on - strand, within Pf6N2E2_4357 at 5088.249 kb on + strand, within Pf6N2E2_4357 at 5088.250 kb on - strand, within Pf6N2E2_4357 at 5088.250 kb on - strand, within Pf6N2E2_4357 at 5088.339 kb on + strand, within Pf6N2E2_4357 at 5088.339 kb on + strand, within Pf6N2E2_4357 at 5088.339 kb on + strand, within Pf6N2E2_4357 at 5088.339 kb on + strand, within Pf6N2E2_4357 at 5088.339 kb on + strand, within Pf6N2E2_4357 at 5088.340 kb on - strand, within Pf6N2E2_4357 at 5088.340 kb on - strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.399 kb on + strand, within Pf6N2E2_4357 at 5088.400 kb on - strand, within Pf6N2E2_4357 at 5088.400 kb on - strand, within Pf6N2E2_4357 at 5088.400 kb on - strand, within Pf6N2E2_4357 at 5088.400 kb on - strand, within Pf6N2E2_4357 at 5088.400 kb on - strand, within Pf6N2E2_4357 at 5088.400 kb on - strand, within Pf6N2E2_4357
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 5,087,615 - -0.1 5,087,665 - +0.9 5,087,713 + +0.9 5,087,713 + -1.1 5,087,713 + -2.7 5,087,714 - +1.6 5,087,714 - +0.7 5,087,733 - -1.0 5,087,782 - Pf6N2E2_4357 0.10 +2.0 5,087,782 - Pf6N2E2_4357 0.10 +1.2 5,087,782 - Pf6N2E2_4357 0.10 -0.1 5,087,782 - Pf6N2E2_4357 0.10 -0.6 5,087,889 + Pf6N2E2_4357 0.23 -0.6 5,087,890 - Pf6N2E2_4357 0.23 -0.5 5,087,890 - Pf6N2E2_4357 0.23 -1.2 5,087,898 + Pf6N2E2_4357 0.24 -1.5 5,087,898 + Pf6N2E2_4357 0.24 +0.8 5,087,898 + Pf6N2E2_4357 0.24 +1.2 5,087,899 - Pf6N2E2_4357 0.24 +0.1 5,087,899 - Pf6N2E2_4357 0.24 -0.8 5,087,946 + Pf6N2E2_4357 0.29 +0.5 5,087,946 + Pf6N2E2_4357 0.29 -1.8 5,087,946 + Pf6N2E2_4357 0.29 +0.1 5,087,946 + Pf6N2E2_4357 0.29 -1.2 5,087,946 + Pf6N2E2_4357 0.29 +0.1 5,087,947 - Pf6N2E2_4357 0.29 -0.3 5,087,947 - Pf6N2E2_4357 0.29 -0.9 5,088,094 - Pf6N2E2_4357 0.47 -1.7 5,088,177 + Pf6N2E2_4357 0.56 +0.4 5,088,177 + Pf6N2E2_4357 0.56 -2.7 5,088,177 + Pf6N2E2_4357 0.56 +0.0 5,088,177 + Pf6N2E2_4357 0.56 +0.2 5,088,177 + Pf6N2E2_4357 0.56 +0.6 5,088,177 + Pf6N2E2_4357 0.56 -0.4 5,088,177 + Pf6N2E2_4357 0.56 -0.0 5,088,178 - Pf6N2E2_4357 0.56 -0.6 5,088,178 - Pf6N2E2_4357 0.56 -0.8 5,088,178 - Pf6N2E2_4357 0.56 +0.5 5,088,178 - Pf6N2E2_4357 0.56 -0.1 5,088,178 - Pf6N2E2_4357 0.56 +1.3 5,088,178 - Pf6N2E2_4357 0.56 +0.6 5,088,178 - Pf6N2E2_4357 0.56 +1.5 5,088,178 - Pf6N2E2_4357 0.56 -0.1 5,088,249 + Pf6N2E2_4357 0.65 -0.3 5,088,250 - Pf6N2E2_4357 0.65 +0.7 5,088,250 - Pf6N2E2_4357 0.65 +1.9 5,088,339 + Pf6N2E2_4357 0.75 +0.6 5,088,339 + Pf6N2E2_4357 0.75 +0.5 5,088,339 + Pf6N2E2_4357 0.75 -1.4 5,088,339 + Pf6N2E2_4357 0.75 +0.6 5,088,339 + Pf6N2E2_4357 0.75 -0.6 5,088,340 - Pf6N2E2_4357 0.75 -0.9 5,088,340 - Pf6N2E2_4357 0.75 +0.7 5,088,399 + Pf6N2E2_4357 0.82 -0.5 5,088,399 + Pf6N2E2_4357 0.82 +0.2 5,088,399 + Pf6N2E2_4357 0.82 -1.3 5,088,399 + Pf6N2E2_4357 0.82 -0.5 5,088,399 + Pf6N2E2_4357 0.82 +0.5 5,088,399 + Pf6N2E2_4357 0.82 -1.4 5,088,399 + Pf6N2E2_4357 0.82 +0.4 5,088,399 + Pf6N2E2_4357 0.82 +0.5 5,088,400 - Pf6N2E2_4357 0.82 +0.5 5,088,400 - Pf6N2E2_4357 0.82 -0.0 5,088,400 - Pf6N2E2_4357 0.82 +1.2 5,088,400 - Pf6N2E2_4357 0.82 +0.5 5,088,400 - Pf6N2E2_4357 0.82 +0.3 5,088,400 - Pf6N2E2_4357 0.82 +0.7
Or see this region's nucleotide sequence