Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4355

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4354 and Pf6N2E2_4355 overlap by 4 nucleotidesPf6N2E2_4355 and Pf6N2E2_4356 are separated by 6 nucleotides Pf6N2E2_4354 - Ferric siderophore transport system, periplasmic binding protein TonB, at 5,085,347 to 5,086,102 _4354 Pf6N2E2_4355 - Biopolymer transport protein ExbD/TolR, at 5,086,099 to 5,086,527 _4355 Pf6N2E2_4356 - MotA/TolQ/ExbB proton channel family protein, at 5,086,534 to 5,087,505 _4356 Position (kb) 5086 5087Strain fitness (log2 ratio) -1 0 1at 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.175 kb on + strandat 5085.176 kb on - strandat 5085.176 kb on - strandat 5085.176 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.180 kb on - strandat 5085.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,085,175 + +0.1
5,085,175 + +1.0
5,085,175 + -0.0
5,085,175 + -0.2
5,085,175 + +0.0
5,085,175 + +0.4
5,085,175 + -1.2
5,085,175 + +0.5
5,085,175 + +0.7
5,085,175 + +1.1
5,085,175 + +0.3
5,085,176 - +0.8
5,085,176 - +0.3
5,085,176 - +0.3
5,085,180 - -1.4
5,085,180 - -0.4
5,085,180 - -1.0
5,085,180 - +0.9
5,085,180 - +1.3
5,085,180 - -0.9
5,085,180 - -0.3
5,085,245 - +0.4

Or see this region's nucleotide sequence