Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1415 and Pf6N2E2_1416 are separated by 300 nucleotides Pf6N2E2_1416 and Pf6N2E2_1417 are separated by 90 nucleotides Pf6N2E2_1417 and Pf6N2E2_1418 are separated by 174 nucleotides Pf6N2E2_1418 and Pf6N2E2_1419 are separated by 174 nucleotides
Pf6N2E2_1415 - mannuronan C-5-epimerase, putative, at 1,658,884 to 1,664,496
_1415
Pf6N2E2_1416 - Type I secretion outer membrane protein, TolC precursor, at 1,664,797 to 1,665,003
_1416
Pf6N2E2_1417 - Type I secretion outer membrane protein, TolC precursor, at 1,665,094 to 1,665,249
_1417
Pf6N2E2_1418 - Type I secretion outer membrane protein, TolC precursor, at 1,665,424 to 1,665,579
_1418
Pf6N2E2_1419 - Type I secretion outer membrane protein, TolC precursor, at 1,665,754 to 1,667,103
_1419
Position (kb)
1664
1665
1666 Strain fitness (log2 ratio)
-2
-1
0
1 at 1663.822 kb on + strand, within Pf6N2E2_1415 at 1663.823 kb on - strand, within Pf6N2E2_1415 at 1663.872 kb on + strand, within Pf6N2E2_1415 at 1663.873 kb on - strand, within Pf6N2E2_1415 at 1663.873 kb on - strand, within Pf6N2E2_1415 at 1664.197 kb on + strand at 1664.197 kb on + strand at 1664.197 kb on + strand at 1664.198 kb on - strand at 1664.471 kb on + strand at 1664.471 kb on + strand at 1664.472 kb on - strand at 1664.523 kb on + strand at 1664.523 kb on + strand at 1664.524 kb on - strand at 1664.527 kb on + strand at 1664.528 kb on - strand at 1664.999 kb on - strand at 1665.990 kb on + strand, within Pf6N2E2_1419 at 1665.991 kb on - strand, within Pf6N2E2_1419 at 1665.991 kb on - strand, within Pf6N2E2_1419 at 1665.991 kb on - strand, within Pf6N2E2_1419
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,663,822 + Pf6N2E2_1415 0.88 -0.4 1,663,823 - Pf6N2E2_1415 0.88 -2.6 1,663,872 + Pf6N2E2_1415 0.89 -1.2 1,663,873 - Pf6N2E2_1415 0.89 -0.8 1,663,873 - Pf6N2E2_1415 0.89 -0.3 1,664,197 + -0.2 1,664,197 + -0.4 1,664,197 + +0.2 1,664,198 - +1.2 1,664,471 + -0.2 1,664,471 + -0.3 1,664,472 - +0.9 1,664,523 + +0.0 1,664,523 + -0.9 1,664,524 - +1.0 1,664,527 + -0.2 1,664,528 - +1.3 1,664,999 - -0.0 1,665,990 + Pf6N2E2_1419 0.17 +1.0 1,665,991 - Pf6N2E2_1419 0.18 +0.1 1,665,991 - Pf6N2E2_1419 0.18 -1.8 1,665,991 - Pf6N2E2_1419 0.18 -0.3
Or see this region's nucleotide sequence