Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1169

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1166 and Pf6N2E2_1167 are separated by 77 nucleotidesPf6N2E2_1167 and Pf6N2E2_1168 are separated by 61 nucleotidesPf6N2E2_1168 and Pf6N2E2_1169 are separated by 27 nucleotidesPf6N2E2_1169 and Pf6N2E2_1170 are separated by 643 nucleotides Pf6N2E2_1166 - Mobile element protein, at 1,367,174 to 1,367,464 _1166 Pf6N2E2_1167 - Transposase, at 1,367,542 to 1,367,838 _1167 Pf6N2E2_1168 - Transposase, at 1,367,900 to 1,368,298 _1168 Pf6N2E2_1169 - TnpR protein, at 1,368,326 to 1,368,886 _1169 Pf6N2E2_1170 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 1,369,530 to 1,371,032 _1170 Position (kb) 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2at 1367.489 kb on - strandat 1367.520 kb on + strandat 1367.520 kb on + strandat 1367.521 kb on - strandat 1367.979 kb on - strand, within Pf6N2E2_1168at 1368.093 kb on - strand, within Pf6N2E2_1168at 1368.141 kb on - strand, within Pf6N2E2_1168at 1368.142 kb on + strand, within Pf6N2E2_1168at 1368.188 kb on + strand, within Pf6N2E2_1168at 1368.189 kb on - strand, within Pf6N2E2_1168at 1368.189 kb on - strand, within Pf6N2E2_1168at 1368.189 kb on - strand, within Pf6N2E2_1168at 1368.368 kb on - strandat 1368.578 kb on + strand, within Pf6N2E2_1169at 1368.578 kb on + strand, within Pf6N2E2_1169at 1368.579 kb on - strand, within Pf6N2E2_1169at 1368.599 kb on + strand, within Pf6N2E2_1169at 1368.982 kb on + strandat 1369.230 kb on + strandat 1369.295 kb on + strandat 1369.364 kb on - strandat 1369.364 kb on - strandat 1369.401 kb on - strandat 1369.401 kb on - strandat 1369.401 kb on - strandat 1369.485 kb on + strandat 1369.485 kb on + strandat 1369.485 kb on + strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.486 kb on - strandat 1369.489 kb on + strandat 1369.490 kb on - strandat 1369.490 kb on - strandat 1369.490 kb on - strandat 1369.490 kb on - strandat 1369.490 kb on - strandat 1369.490 kb on - strandat 1369.509 kb on + strandat 1369.531 kb on + strandat 1369.532 kb on - strandat 1369.588 kb on - strandat 1369.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,367,489 - -0.5
1,367,520 + -0.8
1,367,520 + -1.8
1,367,521 - +0.0
1,367,979 - Pf6N2E2_1168 0.20 -1.2
1,368,093 - Pf6N2E2_1168 0.48 -1.6
1,368,141 - Pf6N2E2_1168 0.60 -0.1
1,368,142 + Pf6N2E2_1168 0.61 -0.1
1,368,188 + Pf6N2E2_1168 0.72 +0.7
1,368,189 - Pf6N2E2_1168 0.72 -1.5
1,368,189 - Pf6N2E2_1168 0.72 -0.7
1,368,189 - Pf6N2E2_1168 0.72 +0.8
1,368,368 - +1.1
1,368,578 + Pf6N2E2_1169 0.45 -0.6
1,368,578 + Pf6N2E2_1169 0.45 -2.0
1,368,579 - Pf6N2E2_1169 0.45 +0.7
1,368,599 + Pf6N2E2_1169 0.49 -2.1
1,368,982 + -0.3
1,369,230 + +0.2
1,369,295 + +1.3
1,369,364 - -0.2
1,369,364 - -0.4
1,369,401 - -1.2
1,369,401 - -0.7
1,369,401 - -0.4
1,369,485 + -1.9
1,369,485 + -0.3
1,369,485 + -1.9
1,369,486 - -0.1
1,369,486 - +0.7
1,369,486 - +1.5
1,369,486 - +0.2
1,369,486 - -0.2
1,369,486 - +2.3
1,369,486 - -0.9
1,369,486 - +1.0
1,369,486 - +0.2
1,369,486 - -0.4
1,369,486 - +2.4
1,369,489 + +0.3
1,369,490 - -0.4
1,369,490 - +1.1
1,369,490 - +0.3
1,369,490 - +1.1
1,369,490 - -0.0
1,369,490 - +1.0
1,369,509 + -0.9
1,369,531 + -1.3
1,369,532 - +0.1
1,369,588 - -0.7
1,369,588 - +0.0

Or see this region's nucleotide sequence