Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1166 and Pf6N2E2_1167 are separated by 77 nucleotides Pf6N2E2_1167 and Pf6N2E2_1168 are separated by 61 nucleotides Pf6N2E2_1168 and Pf6N2E2_1169 are separated by 27 nucleotides Pf6N2E2_1169 and Pf6N2E2_1170 are separated by 643 nucleotides
Pf6N2E2_1166 - Mobile element protein, at 1,367,174 to 1,367,464
_1166
Pf6N2E2_1167 - Transposase, at 1,367,542 to 1,367,838
_1167
Pf6N2E2_1168 - Transposase, at 1,367,900 to 1,368,298
_1168
Pf6N2E2_1169 - TnpR protein, at 1,368,326 to 1,368,886
_1169
Pf6N2E2_1170 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 1,369,530 to 1,371,032
_1170
Position (kb)
1368
1369 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1367.489 kb on - strand at 1367.520 kb on + strand at 1367.520 kb on + strand at 1367.521 kb on - strand at 1367.979 kb on - strand, within Pf6N2E2_1168 at 1368.093 kb on - strand, within Pf6N2E2_1168 at 1368.141 kb on - strand, within Pf6N2E2_1168 at 1368.142 kb on + strand, within Pf6N2E2_1168 at 1368.188 kb on + strand, within Pf6N2E2_1168 at 1368.189 kb on - strand, within Pf6N2E2_1168 at 1368.189 kb on - strand, within Pf6N2E2_1168 at 1368.189 kb on - strand, within Pf6N2E2_1168 at 1368.368 kb on - strand at 1368.578 kb on + strand, within Pf6N2E2_1169 at 1368.578 kb on + strand, within Pf6N2E2_1169 at 1368.579 kb on - strand, within Pf6N2E2_1169 at 1368.599 kb on + strand, within Pf6N2E2_1169 at 1368.982 kb on + strand at 1369.230 kb on + strand at 1369.295 kb on + strand at 1369.364 kb on - strand at 1369.364 kb on - strand at 1369.401 kb on - strand at 1369.401 kb on - strand at 1369.401 kb on - strand at 1369.485 kb on + strand at 1369.485 kb on + strand at 1369.485 kb on + strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.486 kb on - strand at 1369.489 kb on + strand at 1369.490 kb on - strand at 1369.490 kb on - strand at 1369.490 kb on - strand at 1369.490 kb on - strand at 1369.490 kb on - strand at 1369.490 kb on - strand at 1369.509 kb on + strand at 1369.531 kb on + strand at 1369.532 kb on - strand at 1369.588 kb on - strand at 1369.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,367,489 - -0.5 1,367,520 + -0.8 1,367,520 + -1.8 1,367,521 - +0.0 1,367,979 - Pf6N2E2_1168 0.20 -1.2 1,368,093 - Pf6N2E2_1168 0.48 -1.6 1,368,141 - Pf6N2E2_1168 0.60 -0.1 1,368,142 + Pf6N2E2_1168 0.61 -0.1 1,368,188 + Pf6N2E2_1168 0.72 +0.7 1,368,189 - Pf6N2E2_1168 0.72 -1.5 1,368,189 - Pf6N2E2_1168 0.72 -0.7 1,368,189 - Pf6N2E2_1168 0.72 +0.8 1,368,368 - +1.1 1,368,578 + Pf6N2E2_1169 0.45 -0.6 1,368,578 + Pf6N2E2_1169 0.45 -2.0 1,368,579 - Pf6N2E2_1169 0.45 +0.7 1,368,599 + Pf6N2E2_1169 0.49 -2.1 1,368,982 + -0.3 1,369,230 + +0.2 1,369,295 + +1.3 1,369,364 - -0.2 1,369,364 - -0.4 1,369,401 - -1.2 1,369,401 - -0.7 1,369,401 - -0.4 1,369,485 + -1.9 1,369,485 + -0.3 1,369,485 + -1.9 1,369,486 - -0.1 1,369,486 - +0.7 1,369,486 - +1.5 1,369,486 - +0.2 1,369,486 - -0.2 1,369,486 - +2.3 1,369,486 - -0.9 1,369,486 - +1.0 1,369,486 - +0.2 1,369,486 - -0.4 1,369,486 - +2.4 1,369,489 + +0.3 1,369,490 - -0.4 1,369,490 - +1.1 1,369,490 - +0.3 1,369,490 - +1.1 1,369,490 - -0.0 1,369,490 - +1.0 1,369,509 + -0.9 1,369,531 + -1.3 1,369,532 - +0.1 1,369,588 - -0.7 1,369,588 - +0.0
Or see this region's nucleotide sequence