Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11825

Experiment: R2A with Carbenicillin 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Carbenicillin 0.2 mg/ml
2,932,577	+		CA265_RS11820	0.22	+0.6
2,932,617	+		CA265_RS11820	0.25	-0.6
2,932,618	-		CA265_RS11820	0.25	-0.1
2,932,618	-		CA265_RS11820	0.25	+0.9
2,932,775	+		CA265_RS11820	0.37	-0.8
2,932,785	-		CA265_RS11820	0.38	+0.0
2,932,788	-		CA265_RS11820	0.38	+0.6
2,932,843	-		CA265_RS11820	0.43	+0.2
2,932,848	+		CA265_RS11820	0.43	+0.1
2,932,916	+		CA265_RS11820	0.48	-0.4
2,932,917	-		CA265_RS11820	0.49	-0.9
2,932,919	+		CA265_RS11820	0.49	-0.3
2,932,919	+		CA265_RS11820	0.49	+0.1
2,933,092	+		CA265_RS11820	0.62	-0.1
2,933,093	-		CA265_RS11820	0.62	-0.4
2,933,144	+		CA265_RS11820	0.67	+0.6
2,933,165	+		CA265_RS11820	0.68	-0.1
2,933,175	+		CA265_RS11820	0.69	+0.1
2,933,257	-		CA265_RS11820	0.75	-1.2
2,933,302	-		CA265_RS11820	0.79	-0.8
2,933,403	+		CA265_RS11820	0.87	+0.3
2,933,424	+		CA265_RS11820	0.89	+0.2
2,933,424	+		CA265_RS11820	0.89	+0.0
2,933,424	+		CA265_RS11820	0.89	+0.0
2,933,425	-		CA265_RS11820	0.89	-0.0
2,933,463	+				-0.2
2,933,467	-				-0.2
2,933,652	-				+0.0
2,933,652	-				-0.1
2,933,753	-		CA265_RS11825	0.17	-2.4
2,933,763	-		CA265_RS11825	0.18	+0.1
2,933,763	-		CA265_RS11825	0.18	+0.3
2,933,830	+		CA265_RS11825	0.24	-1.2
2,933,873	+		CA265_RS11825	0.28	-0.1
2,933,874	-		CA265_RS11825	0.28	+1.7
2,933,880	+		CA265_RS11825	0.28	-0.2
2,933,884	+		CA265_RS11825	0.29	+0.0
2,933,884	+		CA265_RS11825	0.29	-0.1
2,933,885	-		CA265_RS11825	0.29	-0.4
2,933,914	+		CA265_RS11825	0.31	-0.3
2,933,929	+		CA265_RS11825	0.33	+1.1
2,933,930	-		CA265_RS11825	0.33	+0.0
2,933,930	-		CA265_RS11825	0.33	-0.2
2,934,021	-		CA265_RS11825	0.41	-0.6
2,934,032	-		CA265_RS11825	0.42	-0.0
2,934,037	+		CA265_RS11825	0.42	+0.0
2,934,052	-		CA265_RS11825	0.44	-0.1
2,934,097	+		CA265_RS11825	0.48	-2.2
2,934,100	+		CA265_RS11825	0.48	+0.4
2,934,101	-		CA265_RS11825	0.48	+0.1
2,934,102	+		CA265_RS11825	0.48	-0.3
2,934,128	-		CA265_RS11825	0.51	+1.4
2,934,128	-		CA265_RS11825	0.51	-0.6
2,934,131	-		CA265_RS11825	0.51	+0.3
2,934,133	+		CA265_RS11825	0.51	-0.1
2,934,134	-		CA265_RS11825	0.51	-0.2
2,934,184	+		CA265_RS11825	0.56	+0.6
2,934,237	+		CA265_RS11825	0.60	+0.1
2,934,238	-		CA265_RS11825	0.61	-0.4
2,934,355	+		CA265_RS11825	0.71	+1.3
2,934,361	+		CA265_RS11825	0.72	-0.5
2,934,459	+		CA265_RS11825	0.80	-0.3
2,934,487	+		CA265_RS11825	0.83	-0.2
2,934,488	-		CA265_RS11825	0.83	+1.1
2,934,520	-		CA265_RS11825	0.86	-0.7
2,934,527	-		CA265_RS11825	0.87	+0.2
2,934,578	+				+0.3
2,934,654	+				+0.6
2,934,661	+				-0.1
2,934,679	+				+0.1
2,934,742	+				-0.1
2,934,753	-				-0.0
2,934,773	+				+0.5
2,934,773	+				+0.3
2,934,773	+				+0.0
2,934,774	-				+0.2
2,934,859	+		CA265_RS11830	0.13	+0.5
2,934,947	+		CA265_RS11830	0.19	+1.7
2,934,969	-		CA265_RS11830	0.21	+0.4
2,935,058	-		CA265_RS11830	0.27	-0.2
2,935,097	+		CA265_RS11830	0.30	-0.1
2,935,147	-		CA265_RS11830	0.34	-0.4
2,935,162	-		CA265_RS11830	0.35	-0.4
2,935,173	+		CA265_RS11830	0.36	-1.0
2,935,227	-		CA265_RS11830	0.40	-0.2
2,935,248	-		CA265_RS11830	0.41	-0.2
2,935,353	-		CA265_RS11830	0.49	+0.2
2,935,447	+		CA265_RS11830	0.55	-0.4
2,935,448	-		CA265_RS11830	0.56	-1.1
2,935,494	+		CA265_RS11830	0.59	-0.1
2,935,612	+		CA265_RS11830	0.67	-2.0
2,935,624	+		CA265_RS11830	0.68	-0.7
2,935,625	-		CA265_RS11830	0.68	-0.6
2,935,626	+		CA265_RS11830	0.68	-0.1
2,935,644	+		CA265_RS11830	0.70	-0.3
2,935,665	-		CA265_RS11830	0.71	+0.3