Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05725

Experiment: R2A with Carbenicillin 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Carbenicillin 0.2 mg/ml
1,392,281	+		CA265_RS05720	0.50	-1.6
1,392,314	-		CA265_RS05720	0.52	-2.0
1,392,314	-		CA265_RS05720	0.52	-0.1
1,392,315	+		CA265_RS05720	0.52	-0.1
1,392,328	-		CA265_RS05720	0.53	-3.0
1,392,328	-		CA265_RS05720	0.53	-3.0
1,392,330	+		CA265_RS05720	0.53	-0.4
1,392,331	-		CA265_RS05720	0.53	-3.2
1,392,339	+		CA265_RS05720	0.53	-0.6
1,392,350	+		CA265_RS05720	0.54	+0.5
1,392,355	+		CA265_RS05720	0.54	-0.9
1,392,398	+		CA265_RS05720	0.57	-1.1
1,392,422	+		CA265_RS05720	0.58	-1.9
1,392,423	-		CA265_RS05720	0.58	-2.6
1,392,469	+		CA265_RS05720	0.60	-3.7
1,392,470	-		CA265_RS05720	0.60	-1.9
1,392,472	-		CA265_RS05720	0.60	-1.8
1,392,479	-		CA265_RS05720	0.61	-2.5
1,392,609	+		CA265_RS05720	0.67	-1.5
1,392,614	-		CA265_RS05720	0.68	-1.7
1,392,678	+		CA265_RS05720	0.71	-0.9
1,392,679	-		CA265_RS05720	0.71	-4.4
1,392,679	-		CA265_RS05720	0.71	-3.8
1,392,684	-		CA265_RS05720	0.71	-3.9
1,392,706	-		CA265_RS05720	0.72	-3.5
1,392,714	-		CA265_RS05720	0.73	-1.2
1,392,751	-		CA265_RS05720	0.75	-2.3
1,392,755	+		CA265_RS05720	0.75	-1.2
1,392,755	+		CA265_RS05720	0.75	-1.3
1,392,837	+		CA265_RS05720	0.79	-0.2
1,392,838	-		CA265_RS05720	0.79	-2.7
1,392,922	-		CA265_RS05720	0.84	-3.1
1,392,930	+		CA265_RS05720	0.84	-1.5
1,392,972	+		CA265_RS05720	0.86	-0.3
1,392,978	-		CA265_RS05720	0.87	-0.9
1,392,978	-		CA265_RS05720	0.87	-2.5
1,393,012	+		CA265_RS05720	0.88	-2.8
1,393,013	-		CA265_RS05720	0.88	-3.1
1,393,013	-		CA265_RS05720	0.88	-4.1
1,393,013	-		CA265_RS05720	0.88	-1.3
1,393,013	-		CA265_RS05720	0.88	-2.1
1,393,014	+		CA265_RS05720	0.88	-1.1
1,393,015	-		CA265_RS05720	0.88	-0.3
1,393,018	-		CA265_RS05720	0.89	-2.5
1,393,032	+				+0.1
1,393,061	+				-2.3
1,393,062	-				-2.4
1,393,154	+				-0.9
1,393,191	+				-0.8
1,393,207	-				-3.4
1,393,209	-				-3.4
1,393,240	+				-1.8
1,393,240	+				-1.4
1,393,241	-				-3.0
1,393,241	-				-2.6
1,393,317	+		CA265_RS05725	0.12	-2.3
1,393,374	+		CA265_RS05725	0.22	-5.6
1,393,378	+		CA265_RS05725	0.23	-1.2
1,393,379	-		CA265_RS05725	0.23	-4.2
1,393,406	-		CA265_RS05725	0.28	-3.5
1,393,406	-		CA265_RS05725	0.28	-3.8
1,393,473	+		CA265_RS05725	0.40	-3.7
1,393,529	-		CA265_RS05725	0.49	-2.5
1,393,540	-		CA265_RS05725	0.51	-3.0
1,393,543	-		CA265_RS05725	0.52	-2.4
1,393,557	-		CA265_RS05725	0.54	-3.1
1,393,594	-		CA265_RS05725	0.61	-1.8
1,393,594	-		CA265_RS05725	0.61	-1.6
1,393,596	+		CA265_RS05725	0.61	-2.0
1,393,597	-		CA265_RS05725	0.61	-4.2
1,393,705	-		CA265_RS05725	0.80	-3.8
1,393,823	+				-0.9
1,393,827	+				-0.4
1,393,885	+				-0.1
1,393,885	+				-0.5
1,393,886	-				-2.2
1,393,890	-				-1.5
1,393,905	-				-2.9
1,393,909	-				-4.3
1,393,910	+				-0.7
1,393,922	+				-0.1
1,393,923	-				-2.8
1,393,969	+		CA265_RS05730	0.13	-0.2
1,393,970	-		CA265_RS05730	0.13	-2.8
1,393,970	-		CA265_RS05730	0.13	-0.3
1,393,988	-		CA265_RS05730	0.18	-1.6
1,394,031	-		CA265_RS05730	0.30	-1.9
1,394,033	-		CA265_RS05730	0.31	-1.5
1,394,085	+		CA265_RS05730	0.46	-0.2
1,394,111	-		CA265_RS05730	0.53	-2.5
1,394,134	+		CA265_RS05730	0.60	+0.1
1,394,136	+		CA265_RS05730	0.60	+0.5
1,394,137	-		CA265_RS05730	0.60	-1.7
1,394,159	-		CA265_RS05730	0.67	-2.0
1,394,159	-		CA265_RS05730	0.67	-2.0
1,394,354	-		CA265_RS05735	0.36	-0.9
1,394,373	+		CA265_RS05735	0.45	+0.1
1,394,433	+		CA265_RS05735	0.72	+0.0
1,394,471	+		CA265_RS05735	0.89	-0.6
1,394,487	-				-1.5
1,394,507	+				+0.8
1,394,513	+				-0.4
1,394,547	+				+0.4
1,394,617	+				+0.2
1,394,661	-				-0.6
1,394,788	+				+0.0
1,394,788	+				+0.5
1,394,789	-				-0.7
1,394,789	-				-0.1
1,394,789	-				-0.2