Experiment: R2A with Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03695 and CA265_RS03700 are separated by 40 nucleotides CA265_RS03700 and CA265_RS03705 are separated by 207 nucleotides CA265_RS03705 and CA265_RS03710 overlap by 4 nucleotides
CA265_RS03695: CA265_RS03695 - hypothetical protein, at 879,502 to 879,906
_RS03695
CA265_RS03700: CA265_RS03700 - hypothetical protein, at 879,947 to 880,477
_RS03700
CA265_RS03705: CA265_RS03705 - hypothetical protein, at 880,685 to 882,724
_RS03705
CA265_RS03710: CA265_RS03710 - dihydroorotase, at 882,721 to 883,977
_RS03710
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -1
0
1
2
3 at 879.697 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.698 kb on - strand, within CA265_RS03695 at 879.720 kb on + strand, within CA265_RS03695 at 879.835 kb on - strand, within CA265_RS03695 at 879.855 kb on + strand, within CA265_RS03695 at 879.855 kb on + strand, within CA265_RS03695 at 879.856 kb on - strand, within CA265_RS03695 at 879.978 kb on + strand at 879.994 kb on + strand at 880.034 kb on + strand, within CA265_RS03700 at 880.035 kb on - strand, within CA265_RS03700 at 880.036 kb on + strand, within CA265_RS03700 at 880.036 kb on + strand, within CA265_RS03700 at 880.038 kb on + strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.093 kb on + strand, within CA265_RS03700 at 880.127 kb on + strand, within CA265_RS03700 at 880.142 kb on - strand, within CA265_RS03700 at 880.183 kb on + strand, within CA265_RS03700 at 880.188 kb on + strand, within CA265_RS03700 at 880.188 kb on + strand, within CA265_RS03700 at 880.195 kb on + strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.206 kb on - strand, within CA265_RS03700 at 880.208 kb on - strand, within CA265_RS03700 at 880.227 kb on + strand, within CA265_RS03700 at 880.228 kb on - strand, within CA265_RS03700 at 880.298 kb on + strand, within CA265_RS03700 at 880.418 kb on + strand, within CA265_RS03700 at 880.419 kb on - strand, within CA265_RS03700 at 880.441 kb on - strand at 880.598 kb on + strand at 880.612 kb on - strand at 880.618 kb on + strand at 880.633 kb on + strand at 880.723 kb on - strand at 880.753 kb on - strand at 880.781 kb on + strand at 880.914 kb on - strand, within CA265_RS03705 at 880.955 kb on - strand, within CA265_RS03705 at 880.956 kb on + strand, within CA265_RS03705 at 880.968 kb on - strand, within CA265_RS03705 at 880.983 kb on - strand, within CA265_RS03705 at 880.988 kb on - strand, within CA265_RS03705 at 881.086 kb on - strand, within CA265_RS03705 at 881.088 kb on + strand, within CA265_RS03705 at 881.088 kb on + strand, within CA265_RS03705 at 881.216 kb on - strand, within CA265_RS03705 at 881.237 kb on - strand, within CA265_RS03705 at 881.240 kb on + strand, within CA265_RS03705 at 881.240 kb on + strand, within CA265_RS03705 at 881.241 kb on - strand, within CA265_RS03705 at 881.288 kb on - strand, within CA265_RS03705 at 881.353 kb on + strand, within CA265_RS03705 at 881.354 kb on - strand, within CA265_RS03705 at 881.361 kb on + strand, within CA265_RS03705 at 881.362 kb on - strand, within CA265_RS03705 at 881.416 kb on - strand, within CA265_RS03705 at 881.421 kb on + strand, within CA265_RS03705 at 881.476 kb on + strand, within CA265_RS03705 at 881.483 kb on - strand, within CA265_RS03705 at 881.483 kb on - strand, within CA265_RS03705 at 881.533 kb on + strand, within CA265_RS03705 at 881.539 kb on + strand, within CA265_RS03705 at 881.620 kb on + strand, within CA265_RS03705 at 881.621 kb on - strand, within CA265_RS03705 at 881.693 kb on + strand, within CA265_RS03705 at 881.694 kb on - strand, within CA265_RS03705 at 881.694 kb on - strand, within CA265_RS03705 at 881.698 kb on + strand, within CA265_RS03705 at 881.727 kb on - strand, within CA265_RS03705 at 881.727 kb on - strand, within CA265_RS03705 at 881.728 kb on + strand, within CA265_RS03705 at 881.729 kb on - strand, within CA265_RS03705 at 881.753 kb on - strand, within CA265_RS03705 at 881.863 kb on + strand, within CA265_RS03705 at 882.103 kb on + strand, within CA265_RS03705 at 882.104 kb on - strand, within CA265_RS03705 at 882.104 kb on - strand, within CA265_RS03705 at 882.187 kb on + strand, within CA265_RS03705 at 882.187 kb on + strand, within CA265_RS03705 at 882.188 kb on - strand, within CA265_RS03705 at 882.188 kb on - strand, within CA265_RS03705 at 882.237 kb on - strand, within CA265_RS03705 at 882.274 kb on - strand, within CA265_RS03705 at 882.275 kb on + strand, within CA265_RS03705 at 882.276 kb on - strand, within CA265_RS03705 at 882.276 kb on - strand, within CA265_RS03705 at 882.295 kb on + strand, within CA265_RS03705 at 882.343 kb on - strand, within CA265_RS03705 at 882.411 kb on - strand, within CA265_RS03705 at 882.443 kb on + strand, within CA265_RS03705 at 882.518 kb on + strand at 882.518 kb on + strand, within CA265_RS03705 at 882.519 kb on - strand, within CA265_RS03705 at 882.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Carbenicillin 0.2 mg/ml remove 879,697 + CA265_RS03695 0.48 -0.0 879,697 + CA265_RS03695 0.48 +0.0 879,697 + CA265_RS03695 0.48 +0.1 879,698 - CA265_RS03695 0.48 +0.1 879,720 + CA265_RS03695 0.54 -0.0 879,835 - CA265_RS03695 0.82 +0.1 879,855 + CA265_RS03695 0.87 -1.1 879,855 + CA265_RS03695 0.87 -0.3 879,856 - CA265_RS03695 0.87 -0.4 879,978 + +0.2 879,994 + -0.8 880,034 + CA265_RS03700 0.16 -0.1 880,035 - CA265_RS03700 0.17 +0.1 880,036 + CA265_RS03700 0.17 -0.1 880,036 + CA265_RS03700 0.17 -0.9 880,038 + CA265_RS03700 0.17 -0.9 880,039 - CA265_RS03700 0.17 +0.3 880,039 - CA265_RS03700 0.17 +0.2 880,039 - CA265_RS03700 0.17 -0.1 880,093 + CA265_RS03700 0.27 +0.1 880,127 + CA265_RS03700 0.34 +0.3 880,142 - CA265_RS03700 0.37 -0.4 880,183 + CA265_RS03700 0.44 -0.3 880,188 + CA265_RS03700 0.45 -0.4 880,188 + CA265_RS03700 0.45 -0.6 880,195 + CA265_RS03700 0.47 +0.8 880,196 - CA265_RS03700 0.47 +0.8 880,196 - CA265_RS03700 0.47 -0.0 880,196 - CA265_RS03700 0.47 -0.3 880,206 - CA265_RS03700 0.49 -0.3 880,208 - CA265_RS03700 0.49 -0.7 880,227 + CA265_RS03700 0.53 +0.5 880,228 - CA265_RS03700 0.53 +0.2 880,298 + CA265_RS03700 0.66 -0.1 880,418 + CA265_RS03700 0.89 +0.2 880,419 - CA265_RS03700 0.89 -0.1 880,441 - +0.0 880,598 + +0.2 880,612 - -0.2 880,618 + -0.5 880,633 + +0.2 880,723 - -0.1 880,753 - +0.3 880,781 + +0.4 880,914 - CA265_RS03705 0.11 +0.9 880,955 - CA265_RS03705 0.13 -0.2 880,956 + CA265_RS03705 0.13 -0.3 880,968 - CA265_RS03705 0.14 +0.4 880,983 - CA265_RS03705 0.15 -0.1 880,988 - CA265_RS03705 0.15 +0.1 881,086 - CA265_RS03705 0.20 +0.0 881,088 + CA265_RS03705 0.20 -1.4 881,088 + CA265_RS03705 0.20 +0.0 881,216 - CA265_RS03705 0.26 +0.8 881,237 - CA265_RS03705 0.27 +0.5 881,240 + CA265_RS03705 0.27 +0.1 881,240 + CA265_RS03705 0.27 -0.3 881,241 - CA265_RS03705 0.27 +2.8 881,288 - CA265_RS03705 0.30 +0.1 881,353 + CA265_RS03705 0.33 -0.1 881,354 - CA265_RS03705 0.33 +0.1 881,361 + CA265_RS03705 0.33 +0.8 881,362 - CA265_RS03705 0.33 -1.1 881,416 - CA265_RS03705 0.36 +0.1 881,421 + CA265_RS03705 0.36 +0.3 881,476 + CA265_RS03705 0.39 +0.4 881,483 - CA265_RS03705 0.39 +0.3 881,483 - CA265_RS03705 0.39 +0.1 881,533 + CA265_RS03705 0.42 +0.0 881,539 + CA265_RS03705 0.42 -0.0 881,620 + CA265_RS03705 0.46 +0.3 881,621 - CA265_RS03705 0.46 +1.7 881,693 + CA265_RS03705 0.49 +1.2 881,694 - CA265_RS03705 0.49 +0.5 881,694 - CA265_RS03705 0.49 +0.7 881,698 + CA265_RS03705 0.50 +0.5 881,727 - CA265_RS03705 0.51 +0.1 881,727 - CA265_RS03705 0.51 -0.3 881,728 + CA265_RS03705 0.51 +1.0 881,729 - CA265_RS03705 0.51 -0.7 881,753 - CA265_RS03705 0.52 -0.4 881,863 + CA265_RS03705 0.58 +0.5 882,103 + CA265_RS03705 0.70 -0.1 882,104 - CA265_RS03705 0.70 -0.6 882,104 - CA265_RS03705 0.70 +0.2 882,187 + CA265_RS03705 0.74 +0.8 882,187 + CA265_RS03705 0.74 -0.8 882,188 - CA265_RS03705 0.74 +0.1 882,188 - CA265_RS03705 0.74 -0.0 882,237 - CA265_RS03705 0.76 -0.2 882,274 - CA265_RS03705 0.78 -0.3 882,275 + CA265_RS03705 0.78 -0.5 882,276 - CA265_RS03705 0.78 +0.0 882,276 - CA265_RS03705 0.78 +1.0 882,295 + CA265_RS03705 0.79 -0.5 882,343 - CA265_RS03705 0.81 +0.5 882,411 - CA265_RS03705 0.85 +0.0 882,443 + CA265_RS03705 0.86 -0.1 882,518 + -0.8 882,518 + CA265_RS03705 0.90 -0.2 882,519 - CA265_RS03705 0.90 +0.7 882,559 + -1.4
Or see this region's nucleotide sequence