Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4770

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4767 and Ac3H11_4768 are separated by 160 nucleotidesAc3H11_4768 and Ac3H11_4769 are separated by 16 nucleotidesAc3H11_4769 and Ac3H11_4770 are separated by 177 nucleotidesAc3H11_4770 and Ac3H11_4771 are separated by 85 nucleotides Ac3H11_4767 - Octaprenyl diphosphate synthase (EC 2.5.1.90), at 68,370 to 69,365 _4767 Ac3H11_4768 - LSU ribosomal protein L21p, at 69,526 to 69,837 _4768 Ac3H11_4769 - LSU ribosomal protein L27p, at 69,854 to 70,111 _4769 Ac3H11_4770 - GTP-binding protein Obg, at 70,289 to 71,359 _4770 Ac3H11_4771 - Glutamate 5-kinase (EC 2.7.2.11), at 71,445 to 72,599 _4771 Position (kb) 70 71 72Strain fitness (log2 ratio) -1 0 1at 69.383 kb on - strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.384 kb on + strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.385 kb on - strandat 69.471 kb on + strandat 69.471 kb on + strandat 69.471 kb on + strandat 69.471 kb on + strandat 69.471 kb on + strandat 70.172 kb on + strandat 70.172 kb on + strandat 70.274 kb on + strandat 70.274 kb on + strandat 71.409 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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69,383 - -0.3
69,384 + +0.7
69,384 + +0.4
69,384 + +0.7
69,384 + +0.7
69,384 + +0.7
69,384 + -0.4
69,384 + +0.4
69,384 + +0.9
69,384 + -0.1
69,384 + +0.0
69,385 - +0.4
69,385 - +0.8
69,385 - -0.9
69,385 - +0.1
69,385 - +0.1
69,385 - +0.6
69,385 - +0.2
69,385 - +0.8
69,385 - +0.8
69,385 - +0.3
69,471 + +0.9
69,471 + -0.8
69,471 + +0.9
69,471 + +0.2
69,471 + -0.5
70,172 + -0.5
70,172 + +0.7
70,274 + +0.6
70,274 + -1.4
71,409 + +1.0

Or see this region's nucleotide sequence