Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3909

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3907 and Ac3H11_3908 overlap by 4 nucleotidesAc3H11_3908 and Ac3H11_3909 are separated by 159 nucleotidesAc3H11_3909 and Ac3H11_3910 are separated by 106 nucleotidesAc3H11_3910 and Ac3H11_3911 overlap by 4 nucleotides Ac3H11_3907 - hypothetical protein, at 125,629 to 126,459 _3907 Ac3H11_3908 - hypothetical protein, at 126,456 to 126,806 _3908 Ac3H11_3909 - Putative membrane protein, at 126,966 to 127,610 _3909 Ac3H11_3910 - Transglutaminase-like domain, at 127,717 to 128,409 _3910 Ac3H11_3911 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in phylloquinone biosynthesis, at 128,406 to 128,849 _3911 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2 3at 126.218 kb on + strand, within Ac3H11_3907at 126.295 kb on + strand, within Ac3H11_3907at 126.847 kb on - strandat 126.847 kb on - strandat 126.847 kb on - strandat 127.452 kb on + strand, within Ac3H11_3909at 127.847 kb on - strand, within Ac3H11_3910at 127.874 kb on - strand, within Ac3H11_3910at 127.874 kb on - strand, within Ac3H11_3910at 127.883 kb on - strand, within Ac3H11_3910at 127.926 kb on - strand, within Ac3H11_3910at 128.092 kb on + strand, within Ac3H11_3910at 128.093 kb on - strand, within Ac3H11_3910at 128.209 kb on + strand, within Ac3H11_3910at 128.209 kb on + strand, within Ac3H11_3910at 128.209 kb on + strand, within Ac3H11_3910at 128.210 kb on - strand, within Ac3H11_3910at 128.248 kb on + strand, within Ac3H11_3910at 128.248 kb on + strand, within Ac3H11_3910at 128.248 kb on + strand, within Ac3H11_3910at 128.248 kb on + strand, within Ac3H11_3910at 128.248 kb on + strand, within Ac3H11_3910at 128.248 kb on + strand, within Ac3H11_3910at 128.248 kb on + strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.249 kb on - strand, within Ac3H11_3910at 128.317 kb on + strand, within Ac3H11_3910at 128.317 kb on + strand, within Ac3H11_3910at 128.317 kb on + strand, within Ac3H11_3910at 128.318 kb on - strand, within Ac3H11_3910at 128.318 kb on - strand, within Ac3H11_3910at 128.318 kb on - strand, within Ac3H11_3910at 128.487 kb on + strand, within Ac3H11_3911at 128.487 kb on + strand, within Ac3H11_3911at 128.488 kb on - strand, within Ac3H11_3911at 128.488 kb on - strand, within Ac3H11_3911

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
126,218 + Ac3H11_3907 0.71 -1.8
126,295 + Ac3H11_3907 0.80 -0.1
126,847 - -0.7
126,847 - -0.5
126,847 - -0.0
127,452 + Ac3H11_3909 0.75 +0.2
127,847 - Ac3H11_3910 0.19 +0.6
127,874 - Ac3H11_3910 0.23 -0.3
127,874 - Ac3H11_3910 0.23 +0.5
127,883 - Ac3H11_3910 0.24 -1.0
127,926 - Ac3H11_3910 0.30 -1.8
128,092 + Ac3H11_3910 0.54 +2.2
128,093 - Ac3H11_3910 0.54 -0.2
128,209 + Ac3H11_3910 0.71 -0.6
128,209 + Ac3H11_3910 0.71 +1.0
128,209 + Ac3H11_3910 0.71 -0.5
128,210 - Ac3H11_3910 0.71 -1.8
128,248 + Ac3H11_3910 0.77 -0.3
128,248 + Ac3H11_3910 0.77 -0.1
128,248 + Ac3H11_3910 0.77 +0.4
128,248 + Ac3H11_3910 0.77 +0.6
128,248 + Ac3H11_3910 0.77 -0.6
128,248 + Ac3H11_3910 0.77 +0.2
128,248 + Ac3H11_3910 0.77 -0.4
128,249 - Ac3H11_3910 0.77 -0.2
128,249 - Ac3H11_3910 0.77 -0.1
128,249 - Ac3H11_3910 0.77 -0.5
128,249 - Ac3H11_3910 0.77 -0.1
128,249 - Ac3H11_3910 0.77 +0.9
128,249 - Ac3H11_3910 0.77 -1.0
128,249 - Ac3H11_3910 0.77 +1.1
128,249 - Ac3H11_3910 0.77 +0.2
128,249 - Ac3H11_3910 0.77 -0.3
128,249 - Ac3H11_3910 0.77 +0.5
128,249 - Ac3H11_3910 0.77 -0.7
128,249 - Ac3H11_3910 0.77 +0.6
128,317 + Ac3H11_3910 0.87 -0.2
128,317 + Ac3H11_3910 0.87 +3.1
128,317 + Ac3H11_3910 0.87 -1.1
128,318 - Ac3H11_3910 0.87 -0.5
128,318 - Ac3H11_3910 0.87 +0.3
128,318 - Ac3H11_3910 0.87 -0.5
128,487 + Ac3H11_3911 0.18 -1.2
128,487 + Ac3H11_3911 0.18 -1.7
128,488 - Ac3H11_3911 0.18 +0.2
128,488 - Ac3H11_3911 0.18 -0.0

Or see this region's nucleotide sequence