Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2831

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2830 and Ac3H11_2831 are separated by 316 nucleotidesAc3H11_2831 and Ac3H11_2832 are separated by 254 nucleotidesAc3H11_2832 and Ac3H11_2833 are separated by 112 nucleotides Ac3H11_2830 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 1,135,661 to 1,137,580 _2830 Ac3H11_2831 - Isocitrate lyase (EC 4.1.3.1) (from data), at 1,137,897 to 1,139,228 _2831 Ac3H11_2832 - hypothetical protein, at 1,139,483 to 1,139,911 _2832 Ac3H11_2833 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,140,024 to 1,140,986 _2833 Position (kb) 1137 1138 1139 1140Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1137.587 kb on - strandat 1137.739 kb on - strandat 1137.802 kb on - strandat 1137.802 kb on - strandat 1137.985 kb on + strandat 1137.985 kb on + strandat 1137.985 kb on + strandat 1137.985 kb on + strandat 1137.986 kb on - strandat 1138.024 kb on + strandat 1138.024 kb on + strandat 1138.024 kb on + strandat 1138.024 kb on + strandat 1138.024 kb on + strandat 1138.025 kb on - strandat 1138.025 kb on - strandat 1138.025 kb on - strandat 1138.025 kb on - strandat 1138.025 kb on - strandat 1138.025 kb on - strandat 1138.025 kb on - strandat 1138.025 kb on - strandat 1138.072 kb on + strand, within Ac3H11_2831at 1138.072 kb on + strand, within Ac3H11_2831at 1138.072 kb on + strand, within Ac3H11_2831at 1138.072 kb on + strand, within Ac3H11_2831at 1138.072 kb on + strand, within Ac3H11_2831at 1138.073 kb on - strand, within Ac3H11_2831at 1138.073 kb on - strand, within Ac3H11_2831at 1138.073 kb on - strand, within Ac3H11_2831at 1138.099 kb on + strand, within Ac3H11_2831at 1138.099 kb on + strand, within Ac3H11_2831at 1138.099 kb on + strand, within Ac3H11_2831at 1138.100 kb on - strand, within Ac3H11_2831at 1138.100 kb on - strand, within Ac3H11_2831at 1138.100 kb on - strand, within Ac3H11_2831at 1138.100 kb on - strand, within Ac3H11_2831at 1138.100 kb on - strand, within Ac3H11_2831at 1138.121 kb on + strand, within Ac3H11_2831at 1138.121 kb on + strand, within Ac3H11_2831at 1138.121 kb on + strand, within Ac3H11_2831at 1138.122 kb on - strand, within Ac3H11_2831at 1138.122 kb on - strand, within Ac3H11_2831at 1138.165 kb on + strand, within Ac3H11_2831at 1138.165 kb on + strand, within Ac3H11_2831at 1138.165 kb on + strand, within Ac3H11_2831at 1138.166 kb on - strand, within Ac3H11_2831at 1138.166 kb on - strand, within Ac3H11_2831at 1138.166 kb on - strand, within Ac3H11_2831at 1138.166 kb on - strand, within Ac3H11_2831at 1138.166 kb on - strand, within Ac3H11_2831at 1138.172 kb on - strand, within Ac3H11_2831at 1138.172 kb on - strand, within Ac3H11_2831at 1138.258 kb on + strand, within Ac3H11_2831at 1138.258 kb on + strand, within Ac3H11_2831at 1138.258 kb on + strand, within Ac3H11_2831at 1138.259 kb on - strand, within Ac3H11_2831at 1138.259 kb on - strand, within Ac3H11_2831at 1138.259 kb on - strand, within Ac3H11_2831at 1138.259 kb on - strand, within Ac3H11_2831at 1138.259 kb on - strand, within Ac3H11_2831at 1138.259 kb on - strand, within Ac3H11_2831at 1138.360 kb on + strand, within Ac3H11_2831at 1138.360 kb on + strand, within Ac3H11_2831at 1138.369 kb on + strand, within Ac3H11_2831at 1138.369 kb on + strand, within Ac3H11_2831at 1138.370 kb on - strand, within Ac3H11_2831at 1138.370 kb on - strand, within Ac3H11_2831at 1138.370 kb on - strand, within Ac3H11_2831at 1138.417 kb on + strand, within Ac3H11_2831at 1138.418 kb on - strand, within Ac3H11_2831at 1138.418 kb on - strand, within Ac3H11_2831at 1138.589 kb on + strand, within Ac3H11_2831at 1138.590 kb on - strand, within Ac3H11_2831at 1138.590 kb on - strand, within Ac3H11_2831at 1138.757 kb on - strand, within Ac3H11_2831at 1138.757 kb on - strand, within Ac3H11_2831at 1138.865 kb on - strand, within Ac3H11_2831at 1138.870 kb on + strand, within Ac3H11_2831at 1138.870 kb on + strand, within Ac3H11_2831at 1138.870 kb on + strand, within Ac3H11_2831at 1138.871 kb on - strand, within Ac3H11_2831at 1138.871 kb on - strand, within Ac3H11_2831at 1138.871 kb on - strand, within Ac3H11_2831at 1138.871 kb on - strand, within Ac3H11_2831at 1138.871 kb on - strand, within Ac3H11_2831at 1138.888 kb on + strand, within Ac3H11_2831at 1138.888 kb on + strand, within Ac3H11_2831at 1138.888 kb on + strand, within Ac3H11_2831at 1138.889 kb on - strand, within Ac3H11_2831at 1138.889 kb on - strand, within Ac3H11_2831at 1138.889 kb on - strand, within Ac3H11_2831at 1138.939 kb on + strand, within Ac3H11_2831at 1138.939 kb on + strand, within Ac3H11_2831at 1138.940 kb on - strand, within Ac3H11_2831at 1138.940 kb on - strand, within Ac3H11_2831at 1138.940 kb on - strand, within Ac3H11_2831at 1138.940 kb on - strand, within Ac3H11_2831at 1139.011 kb on + strand, within Ac3H11_2831at 1139.011 kb on + strand, within Ac3H11_2831at 1139.011 kb on + strand, within Ac3H11_2831at 1139.011 kb on + strand, within Ac3H11_2831at 1139.011 kb on + strand, within Ac3H11_2831at 1139.011 kb on + strand, within Ac3H11_2831at 1139.012 kb on - strand, within Ac3H11_2831at 1139.012 kb on - strand, within Ac3H11_2831at 1139.012 kb on - strand, within Ac3H11_2831at 1139.012 kb on - strand, within Ac3H11_2831at 1139.012 kb on - strand, within Ac3H11_2831at 1139.012 kb on - strand, within Ac3H11_2831at 1139.012 kb on - strand, within Ac3H11_2831at 1139.125 kb on + strandat 1139.125 kb on + strandat 1139.125 kb on + strandat 1139.304 kb on + strandat 1139.332 kb on + strandat 1139.369 kb on + strandat 1139.550 kb on + strand, within Ac3H11_2832at 1139.550 kb on + strand, within Ac3H11_2832at 1139.550 kb on + strand, within Ac3H11_2832at 1139.550 kb on + strand, within Ac3H11_2832at 1139.551 kb on - strand, within Ac3H11_2832at 1139.551 kb on - strand, within Ac3H11_2832at 1139.551 kb on - strand, within Ac3H11_2832at 1139.551 kb on - strand, within Ac3H11_2832at 1139.551 kb on - strand, within Ac3H11_2832at 1139.551 kb on - strand, within Ac3H11_2832at 1139.568 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.625 kb on + strand, within Ac3H11_2832at 1139.626 kb on - strand, within Ac3H11_2832at 1139.626 kb on - strand, within Ac3H11_2832at 1139.626 kb on - strand, within Ac3H11_2832at 1139.626 kb on - strand, within Ac3H11_2832at 1139.626 kb on - strand, within Ac3H11_2832at 1139.697 kb on + strand, within Ac3H11_2832at 1139.697 kb on + strand, within Ac3H11_2832at 1139.697 kb on + strand, within Ac3H11_2832at 1139.697 kb on + strand, within Ac3H11_2832at 1139.697 kb on + strand, within Ac3H11_2832at 1139.698 kb on - strand, within Ac3H11_2832at 1139.698 kb on - strand, within Ac3H11_2832at 1139.698 kb on - strand, within Ac3H11_2832at 1139.698 kb on - strand, within Ac3H11_2832at 1139.760 kb on + strand, within Ac3H11_2832at 1139.760 kb on + strand, within Ac3H11_2832at 1139.760 kb on + strand, within Ac3H11_2832at 1139.760 kb on + strand, within Ac3H11_2832at 1139.760 kb on + strand, within Ac3H11_2832at 1139.760 kb on + strand, within Ac3H11_2832at 1139.761 kb on - strand, within Ac3H11_2832at 1139.761 kb on - strand, within Ac3H11_2832at 1139.853 kb on + strand, within Ac3H11_2832at 1139.984 kb on + strandat 1139.984 kb on + strandat 1139.984 kb on + strandat 1139.984 kb on + strandat 1139.984 kb on + strandat 1139.984 kb on + strandat 1139.985 kb on - strandat 1139.985 kb on - strandat 1139.985 kb on - strandat 1139.985 kb on - strandat 1139.985 kb on - strandat 1139.992 kb on + strandat 1139.993 kb on - strandat 1139.993 kb on - strandat 1140.022 kb on + strandat 1140.022 kb on + strandat 1140.022 kb on + strandat 1140.022 kb on + strandat 1140.022 kb on + strandat 1140.022 kb on + strandat 1140.022 kb on + strandat 1140.022 kb on + strandat 1140.023 kb on - strandat 1140.023 kb on - strandat 1140.023 kb on - strandat 1140.023 kb on - strandat 1140.051 kb on + strandat 1140.051 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.090 kb on + strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strandat 1140.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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1,137,587 - -0.2
1,137,739 - +0.8
1,137,802 - -0.2
1,137,802 - -0.6
1,137,985 + -3.4
1,137,985 + -2.7
1,137,985 + -3.0
1,137,985 + -4.4
1,137,986 - -3.2
1,138,024 + -3.2
1,138,024 + -3.4
1,138,024 + -2.7
1,138,024 + -3.2
1,138,024 + -1.7
1,138,025 - +0.8
1,138,025 - -4.0
1,138,025 - -3.3
1,138,025 - -5.0
1,138,025 - -4.5
1,138,025 - +0.8
1,138,025 - -3.7
1,138,025 - -2.0
1,138,072 + Ac3H11_2831 0.13 -5.2
1,138,072 + Ac3H11_2831 0.13 -2.9
1,138,072 + Ac3H11_2831 0.13 +0.8
1,138,072 + Ac3H11_2831 0.13 -3.5
1,138,072 + Ac3H11_2831 0.13 -4.7
1,138,073 - Ac3H11_2831 0.13 -2.7
1,138,073 - Ac3H11_2831 0.13 -2.1
1,138,073 - Ac3H11_2831 0.13 -5.3
1,138,099 + Ac3H11_2831 0.15 +0.7
1,138,099 + Ac3H11_2831 0.15 -3.6
1,138,099 + Ac3H11_2831 0.15 -3.4
1,138,100 - Ac3H11_2831 0.15 -2.6
1,138,100 - Ac3H11_2831 0.15 -2.3
1,138,100 - Ac3H11_2831 0.15 -3.0
1,138,100 - Ac3H11_2831 0.15 -3.9
1,138,100 - Ac3H11_2831 0.15 -4.0
1,138,121 + Ac3H11_2831 0.17 -3.8
1,138,121 + Ac3H11_2831 0.17 -4.2
1,138,121 + Ac3H11_2831 0.17 -4.4
1,138,122 - Ac3H11_2831 0.17 -3.5
1,138,122 - Ac3H11_2831 0.17 -3.6
1,138,165 + Ac3H11_2831 0.20 -2.4
1,138,165 + Ac3H11_2831 0.20 -4.2
1,138,165 + Ac3H11_2831 0.20 -3.5
1,138,166 - Ac3H11_2831 0.20 -2.9
1,138,166 - Ac3H11_2831 0.20 -5.3
1,138,166 - Ac3H11_2831 0.20 -3.3
1,138,166 - Ac3H11_2831 0.20 -2.6
1,138,166 - Ac3H11_2831 0.20 -3.4
1,138,172 - Ac3H11_2831 0.21 -1.7
1,138,172 - Ac3H11_2831 0.21 -3.6
1,138,258 + Ac3H11_2831 0.27 -3.5
1,138,258 + Ac3H11_2831 0.27 -4.4
1,138,258 + Ac3H11_2831 0.27 -3.4
1,138,259 - Ac3H11_2831 0.27 -0.7
1,138,259 - Ac3H11_2831 0.27 -3.7
1,138,259 - Ac3H11_2831 0.27 -2.2
1,138,259 - Ac3H11_2831 0.27 -4.2
1,138,259 - Ac3H11_2831 0.27 -2.1
1,138,259 - Ac3H11_2831 0.27 -3.9
1,138,360 + Ac3H11_2831 0.35 -3.6
1,138,360 + Ac3H11_2831 0.35 -4.5
1,138,369 + Ac3H11_2831 0.35 -3.9
1,138,369 + Ac3H11_2831 0.35 -3.0
1,138,370 - Ac3H11_2831 0.36 -3.0
1,138,370 - Ac3H11_2831 0.36 -4.3
1,138,370 - Ac3H11_2831 0.36 -2.9
1,138,417 + Ac3H11_2831 0.39 -3.0
1,138,418 - Ac3H11_2831 0.39 -3.9
1,138,418 - Ac3H11_2831 0.39 -5.2
1,138,589 + Ac3H11_2831 0.52 -3.8
1,138,590 - Ac3H11_2831 0.52 -2.7
1,138,590 - Ac3H11_2831 0.52 -4.4
1,138,757 - Ac3H11_2831 0.65 -1.2
1,138,757 - Ac3H11_2831 0.65 -3.9
1,138,865 - Ac3H11_2831 0.73 -1.2
1,138,870 + Ac3H11_2831 0.73 -1.7
1,138,870 + Ac3H11_2831 0.73 -3.9
1,138,870 + Ac3H11_2831 0.73 -3.6
1,138,871 - Ac3H11_2831 0.73 -4.1
1,138,871 - Ac3H11_2831 0.73 -3.3
1,138,871 - Ac3H11_2831 0.73 -3.6
1,138,871 - Ac3H11_2831 0.73 -4.4
1,138,871 - Ac3H11_2831 0.73 -4.9
1,138,888 + Ac3H11_2831 0.74 -2.6
1,138,888 + Ac3H11_2831 0.74 -2.9
1,138,888 + Ac3H11_2831 0.74 -4.2
1,138,889 - Ac3H11_2831 0.74 -3.1
1,138,889 - Ac3H11_2831 0.74 -3.8
1,138,889 - Ac3H11_2831 0.74 -4.3
1,138,939 + Ac3H11_2831 0.78 -4.2
1,138,939 + Ac3H11_2831 0.78 -4.2
1,138,940 - Ac3H11_2831 0.78 -5.6
1,138,940 - Ac3H11_2831 0.78 -1.6
1,138,940 - Ac3H11_2831 0.78 -1.7
1,138,940 - Ac3H11_2831 0.78 -4.2
1,139,011 + Ac3H11_2831 0.84 -4.6
1,139,011 + Ac3H11_2831 0.84 -3.0
1,139,011 + Ac3H11_2831 0.84 -3.6
1,139,011 + Ac3H11_2831 0.84 -3.9
1,139,011 + Ac3H11_2831 0.84 -5.1
1,139,011 + Ac3H11_2831 0.84 -3.3
1,139,012 - Ac3H11_2831 0.84 -4.2
1,139,012 - Ac3H11_2831 0.84 -2.2
1,139,012 - Ac3H11_2831 0.84 -4.0
1,139,012 - Ac3H11_2831 0.84 -4.4
1,139,012 - Ac3H11_2831 0.84 -5.3
1,139,012 - Ac3H11_2831 0.84 -2.0
1,139,012 - Ac3H11_2831 0.84 -4.3
1,139,125 + -4.2
1,139,125 + -0.8
1,139,125 + -3.7
1,139,304 + -3.9
1,139,332 + -0.6
1,139,369 + -0.4
1,139,550 + Ac3H11_2832 0.16 -0.6
1,139,550 + Ac3H11_2832 0.16 -0.2
1,139,550 + Ac3H11_2832 0.16 +0.1
1,139,550 + Ac3H11_2832 0.16 +0.4
1,139,551 - Ac3H11_2832 0.16 +0.4
1,139,551 - Ac3H11_2832 0.16 +0.3
1,139,551 - Ac3H11_2832 0.16 +0.7
1,139,551 - Ac3H11_2832 0.16 +0.2
1,139,551 - Ac3H11_2832 0.16 +0.4
1,139,551 - Ac3H11_2832 0.16 +0.2
1,139,568 + Ac3H11_2832 0.20 -0.3
1,139,625 + Ac3H11_2832 0.33 +1.3
1,139,625 + Ac3H11_2832 0.33 -1.0
1,139,625 + Ac3H11_2832 0.33 -0.2
1,139,625 + Ac3H11_2832 0.33 -1.7
1,139,625 + Ac3H11_2832 0.33 -0.3
1,139,625 + Ac3H11_2832 0.33 -0.0
1,139,625 + Ac3H11_2832 0.33 +1.1
1,139,625 + Ac3H11_2832 0.33 -0.0
1,139,626 - Ac3H11_2832 0.33 -0.4
1,139,626 - Ac3H11_2832 0.33 +0.2
1,139,626 - Ac3H11_2832 0.33 +0.3
1,139,626 - Ac3H11_2832 0.33 -2.2
1,139,626 - Ac3H11_2832 0.33 +0.1
1,139,697 + Ac3H11_2832 0.50 -0.2
1,139,697 + Ac3H11_2832 0.50 +0.1
1,139,697 + Ac3H11_2832 0.50 -0.5
1,139,697 + Ac3H11_2832 0.50 -0.1
1,139,697 + Ac3H11_2832 0.50 -0.5
1,139,698 - Ac3H11_2832 0.50 +0.0
1,139,698 - Ac3H11_2832 0.50 -0.4
1,139,698 - Ac3H11_2832 0.50 -0.1
1,139,698 - Ac3H11_2832 0.50 -0.6
1,139,760 + Ac3H11_2832 0.65 -0.4
1,139,760 + Ac3H11_2832 0.65 +0.1
1,139,760 + Ac3H11_2832 0.65 -0.2
1,139,760 + Ac3H11_2832 0.65 -0.0
1,139,760 + Ac3H11_2832 0.65 +0.8
1,139,760 + Ac3H11_2832 0.65 +0.6
1,139,761 - Ac3H11_2832 0.65 -0.5
1,139,761 - Ac3H11_2832 0.65 -0.7
1,139,853 + Ac3H11_2832 0.86 +0.2
1,139,984 + +0.0
1,139,984 + +0.3
1,139,984 + -1.2
1,139,984 + -0.2
1,139,984 + +0.3
1,139,984 + +0.1
1,139,985 - -0.8
1,139,985 - +0.1
1,139,985 - -1.6
1,139,985 - +0.4
1,139,985 - +0.3
1,139,992 + +0.3
1,139,993 - -1.0
1,139,993 - +0.3
1,140,022 + -0.2
1,140,022 + +0.4
1,140,022 + -0.1
1,140,022 + -0.2
1,140,022 + +0.8
1,140,022 + +0.4
1,140,022 + +0.1
1,140,022 + -0.2
1,140,023 - -0.6
1,140,023 - +0.4
1,140,023 - -0.6
1,140,023 - -0.4
1,140,051 + +0.3
1,140,051 + -0.2
1,140,090 + +0.3
1,140,090 + +0.1
1,140,090 + -0.2
1,140,090 + -2.0
1,140,090 + -0.4
1,140,090 + +1.3
1,140,090 + -0.4
1,140,090 + -0.2
1,140,090 + +0.4
1,140,090 + +0.2
1,140,090 + +0.1
1,140,090 + +0.8
1,140,090 + +0.0
1,140,090 + -0.3
1,140,090 + -0.4
1,140,090 + +0.2
1,140,090 + -0.3
1,140,090 + -1.3
1,140,090 + -1.2
1,140,090 + +0.3
1,140,090 + -1.5
1,140,090 + -0.3
1,140,090 + -0.5
1,140,090 + +0.6
1,140,090 + -0.8
1,140,090 + +0.5
1,140,090 + -0.1
1,140,091 - +1.0
1,140,091 - -0.5
1,140,091 - +0.6
1,140,091 - +0.2
1,140,091 - -1.2
1,140,091 - +1.0
1,140,091 - -0.2
1,140,091 - -0.2
1,140,091 - -0.1
1,140,091 - +0.8
1,140,091 - -0.1
1,140,091 - +0.7
1,140,091 - +0.8
1,140,091 - -1.0
1,140,091 - +0.8
1,140,091 - +0.2
1,140,091 - +0.2
1,140,091 - -0.3

Or see this region's nucleotide sequence