Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28225

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28220 and AZOBR_RS28225 are separated by 225 nucleotidesAZOBR_RS28225 and AZOBR_RS28230 are separated by 398 nucleotides AZOBR_RS28220: AZOBR_RS28220 - cyclic nucleotide-binding protein, at 502,629 to 503,369 _RS28220 AZOBR_RS28225: AZOBR_RS28225 - hypothetical protein, at 503,595 to 503,834 _RS28225 AZOBR_RS28230: AZOBR_RS28230 - hypothetical protein, at 504,233 to 504,880 _RS28230 Position (kb) 503 504Strain fitness (log2 ratio) -1 0 1at 502.631 kb on - strandat 503.006 kb on - strand, within AZOBR_RS28220at 503.006 kb on - strand, within AZOBR_RS28220at 503.086 kb on + strand, within AZOBR_RS28220at 503.086 kb on + strand, within AZOBR_RS28220at 503.140 kb on + strand, within AZOBR_RS28220at 503.140 kb on + strand, within AZOBR_RS28220at 503.141 kb on - strand, within AZOBR_RS28220at 503.550 kb on + strandat 503.790 kb on + strand, within AZOBR_RS28225at 503.791 kb on - strand, within AZOBR_RS28225at 504.170 kb on - strandat 504.232 kb on + strandat 504.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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502,631 - +0.5
503,006 - AZOBR_RS28220 0.51 +0.2
503,006 - AZOBR_RS28220 0.51 +0.4
503,086 + AZOBR_RS28220 0.62 +0.4
503,086 + AZOBR_RS28220 0.62 +0.7
503,140 + AZOBR_RS28220 0.69 +1.4
503,140 + AZOBR_RS28220 0.69 -0.2
503,141 - AZOBR_RS28220 0.69 -0.2
503,550 + -0.2
503,790 + AZOBR_RS28225 0.81 +0.0
503,791 - AZOBR_RS28225 0.82 -1.5
504,170 - +1.2
504,232 + +0.2
504,233 - -0.2

Or see this region's nucleotide sequence