Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18550 and AZOBR_RS18555 are separated by 13 nucleotides AZOBR_RS18555 and AZOBR_RS18560 are separated by 159 nucleotides
AZOBR_RS18550: AZOBR_RS18550 - ABC transporter for nitrate, ATPase component <small>(from data)</small>, at 929,593 to 931,257
_RS18550
AZOBR_RS18555: AZOBR_RS18555 - ABC transporter for nitrate, permease component <small>(from data)</small>, at 931,271 to 932,362
_RS18555
AZOBR_RS18560: AZOBR_RS18560 - ABC transporter for nitrate, periplasmic substrate-binding component <small>(from data)</small>, at 932,522 to 933,907
_RS18560
Position (kb) 931
932
933 Strain fitness (log2 ratio) -1
0
1
2 at 930.377 kb on + strand, within AZOBR_RS18550 at 930.378 kb on - strand, within AZOBR_RS18550 at 930.416 kb on + strand, within AZOBR_RS18550 at 930.417 kb on - strand, within AZOBR_RS18550 at 931.017 kb on - strand, within AZOBR_RS18550 at 931.017 kb on - strand, within AZOBR_RS18550 at 931.510 kb on - strand, within AZOBR_RS18555 at 931.510 kb on - strand, within AZOBR_RS18555 at 931.510 kb on - strand, within AZOBR_RS18555 at 931.510 kb on - strand, within AZOBR_RS18555 at 931.510 kb on - strand, within AZOBR_RS18555 at 931.908 kb on + strand, within AZOBR_RS18555 at 931.908 kb on + strand, within AZOBR_RS18555 at 931.908 kb on + strand, within AZOBR_RS18555 at 931.908 kb on + strand, within AZOBR_RS18555 at 931.909 kb on - strand, within AZOBR_RS18555 at 931.909 kb on - strand, within AZOBR_RS18555 at 931.999 kb on - strand, within AZOBR_RS18555 at 931.999 kb on - strand, within AZOBR_RS18555 at 932.592 kb on + strand at 932.592 kb on + strand at 932.592 kb on + strand at 932.617 kb on - strand at 932.655 kb on + strand at 932.730 kb on + strand, within AZOBR_RS18560 at 932.731 kb on - strand, within AZOBR_RS18560 at 932.731 kb on - strand, within AZOBR_RS18560 at 932.745 kb on + strand, within AZOBR_RS18560 at 932.746 kb on - strand, within AZOBR_RS18560 at 932.746 kb on - strand, within AZOBR_RS18560 at 932.746 kb on - strand, within AZOBR_RS18560 at 932.770 kb on - strand, within AZOBR_RS18560 at 932.770 kb on - strand, within AZOBR_RS18560 at 932.844 kb on + strand, within AZOBR_RS18560 at 932.844 kb on + strand, within AZOBR_RS18560 at 932.845 kb on - strand, within AZOBR_RS18560 at 932.853 kb on + strand, within AZOBR_RS18560 at 932.853 kb on + strand, within AZOBR_RS18560 at 932.853 kb on + strand, within AZOBR_RS18560 at 932.854 kb on - strand, within AZOBR_RS18560 at 932.854 kb on - strand, within AZOBR_RS18560 at 932.854 kb on - strand, within AZOBR_RS18560 at 932.854 kb on - strand, within AZOBR_RS18560 at 932.865 kb on + strand, within AZOBR_RS18560 at 932.970 kb on + strand, within AZOBR_RS18560 at 932.971 kb on - strand, within AZOBR_RS18560 at 933.217 kb on - strand, within AZOBR_RS18560 at 933.322 kb on - strand, within AZOBR_RS18560 at 933.324 kb on + strand, within AZOBR_RS18560 at 933.325 kb on - strand, within AZOBR_RS18560 at 933.357 kb on + strand, within AZOBR_RS18560
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 930,377 + AZOBR_RS18550 0.47 -0.3 930,378 - AZOBR_RS18550 0.47 -0.6 930,416 + AZOBR_RS18550 0.49 +0.1 930,417 - AZOBR_RS18550 0.49 -0.1 931,017 - AZOBR_RS18550 0.86 +0.1 931,017 - AZOBR_RS18550 0.86 -0.1 931,510 - AZOBR_RS18555 0.22 +0.3 931,510 - AZOBR_RS18555 0.22 -0.5 931,510 - AZOBR_RS18555 0.22 -0.5 931,510 - AZOBR_RS18555 0.22 -1.5 931,510 - AZOBR_RS18555 0.22 -1.1 931,908 + AZOBR_RS18555 0.58 -0.3 931,908 + AZOBR_RS18555 0.58 -0.1 931,908 + AZOBR_RS18555 0.58 +0.0 931,908 + AZOBR_RS18555 0.58 -1.0 931,909 - AZOBR_RS18555 0.58 -0.0 931,909 - AZOBR_RS18555 0.58 -0.0 931,999 - AZOBR_RS18555 0.67 -0.3 931,999 - AZOBR_RS18555 0.67 -1.2 932,592 + +0.2 932,592 + -0.6 932,592 + -0.3 932,617 - +0.1 932,655 + -0.7 932,730 + AZOBR_RS18560 0.15 -1.0 932,731 - AZOBR_RS18560 0.15 +0.9 932,731 - AZOBR_RS18560 0.15 +0.4 932,745 + AZOBR_RS18560 0.16 +0.3 932,746 - AZOBR_RS18560 0.16 +2.1 932,746 - AZOBR_RS18560 0.16 -0.8 932,746 - AZOBR_RS18560 0.16 -0.3 932,770 - AZOBR_RS18560 0.18 +1.1 932,770 - AZOBR_RS18560 0.18 -0.1 932,844 + AZOBR_RS18560 0.23 +0.0 932,844 + AZOBR_RS18560 0.23 +0.4 932,845 - AZOBR_RS18560 0.23 +0.5 932,853 + AZOBR_RS18560 0.24 -0.4 932,853 + AZOBR_RS18560 0.24 -0.2 932,853 + AZOBR_RS18560 0.24 -0.4 932,854 - AZOBR_RS18560 0.24 +0.3 932,854 - AZOBR_RS18560 0.24 +0.2 932,854 - AZOBR_RS18560 0.24 -0.7 932,854 - AZOBR_RS18560 0.24 -0.2 932,865 + AZOBR_RS18560 0.25 -1.0 932,970 + AZOBR_RS18560 0.32 -0.0 932,971 - AZOBR_RS18560 0.32 -0.5 933,217 - AZOBR_RS18560 0.50 +0.1 933,322 - AZOBR_RS18560 0.58 +0.0 933,324 + AZOBR_RS18560 0.58 -0.6 933,325 - AZOBR_RS18560 0.58 -0.7 933,357 + AZOBR_RS18560 0.60 +1.2
Or see this region's nucleotide sequence